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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 APOLLO_SV Apollo Structured Vocabulary
8 ARO Antibiotic Resistance Ontology
9 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
10 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
11 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
12 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
13 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
14 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
15 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
16 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
17 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
18 CEPH Cephalopod Ontology
19 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
20 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
21 CHIRO CHEBI Integrated Role Ontology
22 CHMO Chemical Methods Ontology
23 CIDO Coronavirus Infectious Disease Ontology
24 CIO Confidence Information Ontology
25 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
26 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
27 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
28 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
29 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
30 CRO Contributor Role Ontology
31 CTCAE-OAEview OAE CTCAE view
32 CTENO Ctenophore Ontology
33 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
34 d-acts Ontology of Document Acts
35 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
36 DDPHENO Dictyostelium discoideum phenotype ontology
37 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
38 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
39 DPO Drosophila Phenotype Ontology
40 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
41 DUO The Data Use Ontology
42 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
43 ECOCORE An ontology of core ecological entities
44 ECTO Environmental conditions, treatments and exposures ontology
45 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
46 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
47 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
48 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
49 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
50 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
51 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
52 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
53 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
54 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
55 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
56 EUPATH VEuPathDB ontology
57 ExO Exposure ontology
58 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
59 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
60 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
61 FBCV FlyBase Controlled Vocabulary
62 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
63 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
64 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
65 FLOPO Flora Phenotype Ontology
66 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
67 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
68 FOBI FOBI
69 FOODON FOODON
70 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
71 GAZ Gazetteer
72 GENEPIO Genomic Epidemiology Ontology
73 GENO Genotype Ontology
74 GEO Geographical Entity Ontology
75 GNO Glycan Naming Ontology
76 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
77 GRO Cereal Plant Gross Anatomy
78 HANCESTRO Human Ancestry Ontology
79 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
80 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
81 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
82 HSAPDV Human Developmental Stages
83 HTN Hypertension Ontology
84 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
85 IAO-Onto-Meta IAO Ontology Metadata
86 ICDO International Classification of Disease Ontology
87 ICEO Integrative and Conjugative Element Ontology
88 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
89 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
90 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
91 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
92 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
93 KISAO Kinetic Simulation Algorithm Ontology
94 KTAO Kidney Tissue Atlas Ontology
95 LABO clinical LABoratory Ontology
96 LINCS-CLOview CLO LINCS view
97 LTHIDO LTHIDO
98 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
99 MAMO Mathematical modeling ontology
100 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
101 MAXO Medical Action Ontology
102 MCO Microbial Conditions Ontology
103 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
104 MFMO Mammalian Feeding Muscle Ontology
105 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
106 MFOMD Mental Disease Ontology
107 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
108 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
109 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
110 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
111 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
112 MMUSDV Mouse Developmental Stages
113 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
114 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
115 MONDO Mondo Disease Ontology
116 MOP Molecular Process Ontology
117 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
118 MPATH Mouse pathology ontology
119 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
120 MPIO Minimum PDDI Information Ontology
121 MRO MHC Restriction Ontology
122 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
123 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
124 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
125 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
126 NCRO Non-Coding RNA Ontology
127 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
128 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
129 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
130 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
131 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
132 NOMEN NOMEN - A nomenclatural ontology for biological names
133 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
134 OARCS Ontology of Arthropod Circulatory Systems
135 OBA Ontology of Biological Attributes
136 OBCS Ontology of Biological and Clinical Statistics
137 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
138 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
139 OBIB Ontology for Biobanking
140 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
141 OboInOwl OboInOwl OBO Format metamodel
142 OCE Ontology of Chemical Elements
143 OCMR Ontology of Chinese Medicine for Rheumatism
144 OCVDAE Ontology of Cardiovascular Drug Adverse Events
145 ODAE Ontology of Drug Adverse Events
146 ODNAE Ontologyof Drug Neuropathy Adverse Events
147 OGG The Ontology of Genes and Genomes
148 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
149 OGG-Bru Ontology of Genes and Genomes - Brucella
150 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
151 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
152 OGG-Dr Ontology of Genes and Genomes - Zebrafish
153 OGG-Mm Ontology of Genes and Genomes - Mouse
154 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
155 OGG-Sc Ontology of Genes and Genomes - Yeast
156 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
157 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
158 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
159 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
160 OHMI Ontology of Host-Microbiome Interactions
161 OHPI Ontology of Host Pathogen Interactions
162 OLAM Ontology of Laboratory Animal Medicine
163 OLATDV Medaka Developmental Stages
164 OLOBO Ontology for Linking Biological and Medical Ontologies
165 OMIABIS Ontologized MIABIS
166 OMIT Ontology for MIRNA Target
167 OMP Ontology of Microbial Phenotypes
168 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
169 ONTONEO Obstetric and Neonatal Ontology
170 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
171 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
172 OPMI Ontology of Precision Medicine and Investigation
173 ORNASEQ Ontology of RNA Sequencing
174 OSCI Ontology for Stem Cell Investigations
175 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
176 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
177 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
178 PDRO The Prescription of Drugs Ontology
179 PDUMDV Platynereis Developmental Stages
180 PECO Plant Experimental Conditions Ontology
181 PHIPO Pathogen Host Interaction Phenotype Ontology
182 PLANA planaria-ontology
183 PLANP Planarian Phenotype Ontology
184 PNO Proper Name Ontology
185 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
186 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
187 PPO Plant Phenology Ontology
188 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
189 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
190 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
191 Reactome Reactome Ontology
192 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
193 RNAO RNA ontology
194 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
195 ROLEO Role Ontology
196 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
197 RXNO Name Reaction Ontology
198 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
199 SBO Systems Biology Ontology
200 SDGIO Sustainable Development Goals Interface Ontology
201 SEPIO Scientific Evidence and Provenance Information Ontology
202 SIBO Social Insect Behavior Ontology
203 SIO Semanticscience Integrated Ontology
204 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
205 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
206 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
207 STATO The Statistical Methods Ontology
208 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
209 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
210 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
211 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
212 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
213 TCMDPO Traditional Chiinese Medicine DPO
214 TFClass_human Ontology of Human Transcription Factors
215 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
216 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
217 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
218 TSO Transportation System Ontology
219 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
220 TXPO Toxic Process Ontology
221 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
222 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
223 UPA Unipathway
224 UPHENO Unified phenotype ontology (uPheno)
225 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
226 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
227 VICO Vaccination Informed Consent Ontology
228 VIO Vaccine Investigation Ontology
229 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
230 VIVO-ISF VIVO-ISF
231 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
232 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
233 VT Vertebrate trait ontology
234 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
235 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
236 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
237 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
238 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
239 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
240 XPO Xenopus Phenotype Ontology
241 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
242 ZECO Zebrafish Experimental Conditions Ontology
243 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
244 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
245 ZP Zebrafish Phenotype Ontology