Logo
HomeIntroductionTutorialFAQsReferencesDownloadLinksContactAcknowledgeNews

Tutorial

 

Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 APOLLO_SV Apollo Structured Vocabulary
8 ARO Antibiotic Resistance Ontology
9 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
10 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
11 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
12 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
13 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
14 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
15 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
16 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
17 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
18 CEPH Cephalopod Ontology
19 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
20 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
21 CHMO Chemical Methods Ontology
22 CIO Confidence Information Ontology
23 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
24 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
25 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
26 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
27 CRO Contributor Role Ontology
28 CTCAE-OAEview OAE CTCAE view
29 CTENO Ctenophore Ontology
30 d-acts Ontology of Document Acts
31 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
32 DDPHENO Dictyostelium discoideum phenotype ontology
33 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
34 DINTO The Drug-Drug Interactions Ontology
35 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
36 DPO Drosophila Phenotype Ontology
37 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
38 DUO The Data Use Ontology
39 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
40 ECOCORE An ontology of core ecological entities
41 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
42 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
43 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
44 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
45 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
46 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
47 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
48 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
49 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
50 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
51 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
52 EUPATH EuPathDB ontology
53 ExO Exposure ontology
54 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
55 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
56 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
57 FBCV FlyBase Controlled Vocabulary
58 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
59 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
60 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
61 FLOPO Flora Phenotype Ontology
62 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
63 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
64 FOODON FOODON
65 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
66 GAZ Gazetteer
67 GENEPIO Genomic Epidemiology Ontology
68 GENO Genotype Ontology
69 GEO Geographical Entity Ontology
70 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
71 GRO Cereal Plant Gross Anatomy
72 HANCESTRO Human Ancestry Ontology
73 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
74 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
75 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
76 HSAPDV Human Developmental Stages
77 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
78 IAO-Onto-Meta IAO Ontology Metadata
79 ICDO International Classification of Disease Ontology
80 ICEO Integrative and Conjugative Element Ontology
81 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
82 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
83 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
84 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
85 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
86 KISAO Kinetic Simulation Algorithm Ontology
87 KTAO Kidney Tissue Atlas Ontology
88 LINCS-CLOview CLO LINCS view
89 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
90 MAMO Mathematical modeling ontology
91 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
92 MCO Microbial Conditions Ontology
93 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
94 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
95 MFOMD Mental Disease Ontology
96 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
97 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
98 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
99 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
100 MMUSDV Mouse Developmental Stages
101 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
102 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
103 MONDO Monarch Disease Ontology
104 MOP Molecular Process Ontology
105 MP Mammalian Phenotype http://purl.obolibrary.org/obo/MP_0000202
106 MPATH Mouse pathology ontology
107 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
108 MPIO Minimum PDDI Information Ontology
109 MRO MHC Restriction Ontology
110 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
111 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
112 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
113 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
114 NCRO Non-Coding RNA Ontology
115 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
116 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
117 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
118 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
119 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
120 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
121 OARCS Ontology of Arthropod Circulatory Systems
122 OBA Ontology of Biological Attributes
123 OBCS Ontology of Biological and Clinical Statistics
124 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
125 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
126 OBIB Ontology for Biobanking
127 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
128 OboInOwl OboInOwl OBO Format metamodel
129 OCMR Ontology of Chinese Medicine for Rheumatism
130 OCVDAE Ontology of Cardiovascular Drug Adverse Events
131 ODAE Ontology of Drug Adverse Events
132 ODNAE Ontologyof Drug Neuropathy Adverse Events
133 OGG The Ontology of Genes and Genomes
134 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
135 OGG-Bru Ontology of Genes and Genomes - Brucella
136 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
137 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
138 OGG-Dr Ontology of Genes and Genomes - Zebrafish
139 OGG-Mm Ontology of Genes and Genomes - Mouse
140 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
141 OGG-Sc Ontology of Genes and Genomes - Yeast
142 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
143 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
144 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
145 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
146 OHMI Ontology of Host-Microbiome Interactions
147 OHPI Ontology of Host-Pathogen Interactions
148 OLAM Ontology of Laboratory Animal Medicine
149 OLATDV Medaka Developmental Stages
150 OLOBO Ontology for Linking Biological and Medical Ontologies
151 OMIABIS Ontologized MIABIS
152 OMIT Ontology for MIRNA Target
153 OMP Ontology of Microbial Phenotypes
154 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
155 ONTONEO Obstetric and Neonatal Ontology
156 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
157 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
158 OPMI Ontology of Precision Medicine and Investigation
159 OSCI Ontology for Stem Cell Investigations
160 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
161 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
162 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
163 PDRO The Prescription of Drugs Ontology
164 PDUMDV Platynereis Developmental Stages
165 PECO Plant Experimental Conditions Ontology
166 PHIPO Pathogen Host Interaction Phenotype Ontology
167 PLANA planaria-ontology
168 PLANP Planarian Phenotype Ontology
169 PNO Proper Name Ontology
170 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
171 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
172 PPO Plant Phenology Ontology
173 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
174 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
175 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
176 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
177 RNAO RNA ontology
178 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
179 ROLEO Role Ontology
180 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
181 RXNO Name Reaction Ontology
182 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
183 SBO Systems Biology Ontology
184 SDGIO Sustainable Development Goals Interface Ontology
185 SIBO Social Insect Behavior Ontology
186 SIO Semanticscience Integrated Ontology
187 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
188 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
189 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
190 STATO The Statistical Methods Ontology
191 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
192 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
193 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
194 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
195 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
196 TCMDPO Traditional Chiinese Medicine DPO
197 TFClass_human Ontology of Human Transcription Factors
198 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
199 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
200 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
201 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
202 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
203 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
204 UPHENO Unified phenotype ontology (uPheno)
205 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
206 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
207 VICO Vaccination Informed Consent Ontology
208 VIO Vaccine Investigation Ontology
209 VIVO-ISF VIVO-ISF
210 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
211 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
212 VT Vertebrate trait ontology
213 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
214 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
215 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
216 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
217 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
218 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
219 XPO Xenopus Phenotype Ontology
220 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
221 ZECO Zebrafish Experimental Conditions Ontology
222 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
223 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
224 ZP Zebrafish Phenotype Ontology