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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 ARO Antibiotic Resistance Ontology
8 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
9 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
10 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
11 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
12 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
13 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
14 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
15 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
16 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
17 CEPH Cephalopod Ontology
18 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
19 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
20 CHMO Chemical Methods Ontology
21 CIO Confidence Information Ontology
22 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
23 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
24 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
25 CTCAE-OAEview OAE CTCAE view
26 CTENO Ctenophore Ontology
27 d-acts Ontology of Document Acts
28 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
29 DDPHENO Dictyostelium discoideum phenotype ontology
30 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
31 DINTO The Drug-Drug Interactions Ontology
32 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
33 DPO Drosophila Phenotype Ontology
34 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
35 DUO The Data Use Ontology
36 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
37 ECOCORE An ontology of core ecological entities
38 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
39 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
40 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
41 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
42 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
43 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
44 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
45 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
46 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
47 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
48 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
49 EUPATH EuPathDB ontology
50 ExO Exposure ontology
51 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
52 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
53 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
54 FBCV FlyBase Controlled Vocabulary
55 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
56 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
57 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
58 FLOPO Flora Phenotype Ontology
59 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
60 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
61 FOODON FOODON
62 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
63 GAZ Gazetteer
64 GENEPIO Genomic Epidemiology Ontology
65 GENO Genotype Ontology
66 GEO Geographical Entity Ontology
67 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
68 GRO Cereal Plant Gross Anatomy
69 HANCESTRO Human Ancestry Ontology
70 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
71 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
72 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
73 HSAPDV Human Developmental Stages
74 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
75 IAO-Onto-Meta IAO Ontology Metadata
76 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
77 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
78 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
79 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
80 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
81 KISAO Kinetic Simulation Algorithm Ontology
82 KTAO Kidney Tissue Atlas Ontology
83 LINCS-CLOview CLO LINCS view
84 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
85 MAMO Mathematical modeling ontology
86 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
87 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
88 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
89 MFOMD Mental Disease Ontology
90 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
91 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
92 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
93 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
94 MMUSDV Mouse Developmental Stages
95 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
96 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
97 MONDO Monarch Disease Ontology
98 MOP Molecular Process Ontology
99 MP Mammalian phenotype http://purl.obolibrary.org/obo/MP_0000202
100 MPATH Mouse pathology
101 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
102 MPIO Minimum PDDI Information Ontology
103 MRO MHC Restriction Ontology
104 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
105 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
106 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
107 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
108 NCRO Non-Coding RNA Ontology
109 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
110 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
111 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
112 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
113 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
114 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
115 OARCS Ontology of Arthropod Circulatory Systems
116 OBA Ontology of Biological Attributes
117 OBCS Ontology of Biological and Clinical Statistics
118 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
119 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
120 OBIB Ontology for Biobanking
121 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
122 OboInOwl OboInOwl OBO Format metamodel
123 OCMR Ontology of Chinese Medicine for Rheumatism
124 OCVDAE Ontology of Cardiovascular Drug Adverse Events
125 ODAE Ontology of Drug Adverse Events
126 ODNAE Ontologyof Drug Neuropathy Adverse Events
127 OGG The Ontology of Genes and Genomes
128 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
129 OGG-Bru Ontology of Genes and Genomes - Brucella
130 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
131 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
132 OGG-Dr Ontology of Genes and Genomes - Zebrafish
133 OGG-Mm Ontology of Genes and Genomes - Mouse
134 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
135 OGG-Sc Ontology of Genes and Genomes - Yeast
136 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
137 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
138 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
139 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
140 OHMI Ontology of Host-Microbiome Interactions
141 OHPI Ontology of Host-Pathogen Interactions
142 OLATDV Medaka Developmental Stages
143 OLOBO Ontology for Linking Biological and Medical Ontologies
144 OMIABIS Ontologized MIABIS
145 OMIT Ontology for MIRNA Target
146 OMP Ontology of Microbial Phenotypes
147 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
148 ONTONEO Obstetric and Neonatal Ontology
149 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
150 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
151 OPMI Ontology of Precision Medicine and Investigation
152 OSCI Ontology for Stem Cell Investigations
153 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
154 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
155 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
156 PDRO The Prescription of Drugs Ontology
157 PDUMDV Platynereis Developmental Stages
158 PECO Plant Experimental Conditions Ontology
159 PLANA planaria-ontology
160 PNO Proper Name Ontology
161 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
162 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
163 PPO Plant Phenology Ontology
164 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
165 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
166 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
167 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
168 RNAO RNA ontology
169 RO Relations Ontology http://purl.obolibrary.org/obo/CARO_0000006
170 ROLEO Role Ontology
171 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
172 RXNO Name Reaction Ontology
173 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
174 SBO Systems Biology
175 SDGIO Sustainable Development Goals Interface Ontology
176 SIBO Social Insect Behavior Ontology
177 SIO Semanticscience Integrated Ontology
178 SO Sequence types and features http://purl.obolibrary.org/obo/SO_0000644
179 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
180 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
181 STATO The Statistical Methods Ontology
182 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
183 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
184 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
185 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
186 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
187 TCMDPO Traditional Chiinese Medicine DPO
188 TFClass_human Ontology of Human Transcription Factors
189 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
190 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
191 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
192 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
193 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
194 UO Units of measurement http://purl.obolibrary.org/obo/UO_0000256
195 UPHENO Combined phenotype ontology
196 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
197 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
198 VICO Vaccination Informed Consent Ontology
199 VIO Vaccine Investigation Ontology
200 VIVO-ISF VIVO-ISF
201 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
202 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
203 VT Vertebrate trait
204 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
205 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
206 WBLS C. elegans development http://purl.obolibrary.org/obo/WBls_0000074
207 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
208 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
209 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
210 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
211 ZECO Zebrafish Experimental Conditions Ontology
212 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
213 ZFS Zebrafish developmental stages http://purl.obolibrary.org/obo/ZFS_0000022