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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 ARO Antibiotic Resistance Ontology
8 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
9 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
10 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
11 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
12 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
13 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
14 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
15 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
16 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
17 CEPH Cephalopod Ontology
18 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
19 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
20 CHMO Chemical Methods Ontology
21 CIO Confidence Information Ontology
22 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
23 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
24 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
25 CRO Contributor Role Ontology
26 CTCAE-OAEview OAE CTCAE view
27 CTENO Ctenophore Ontology
28 d-acts Ontology of Document Acts
29 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
30 DDPHENO Dictyostelium discoideum phenotype ontology
31 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
32 DINTO The Drug-Drug Interactions Ontology
33 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
34 DPO Drosophila Phenotype Ontology
35 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
36 DUO The Data Use Ontology
37 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
38 ECOCORE An ontology of core ecological entities
39 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
40 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
41 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
42 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
43 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
44 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
45 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
46 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
47 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
48 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
49 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
50 EUPATH EuPathDB ontology
51 ExO Exposure ontology
52 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
53 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
54 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
55 FBCV FlyBase Controlled Vocabulary
56 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
57 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
58 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
59 FLOPO Flora Phenotype Ontology
60 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
61 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
62 FOODON FOODON
63 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
64 GAZ Gazetteer
65 GENEPIO Genomic Epidemiology Ontology
66 GENO Genotype Ontology
67 GEO Geographical Entity Ontology
68 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
69 GRO Cereal Plant Gross Anatomy
70 HANCESTRO Human Ancestry Ontology
71 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
72 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
73 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
74 HSAPDV Human Developmental Stages
75 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
76 IAO-Onto-Meta IAO Ontology Metadata
77 ICD-10-CM ICD-10-CM
78 ICD-10-CN International Classification of Diseases, 10th Edition, China
79 ICDC ICDC
80 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
81 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
82 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
83 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
84 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
85 KISAO Kinetic Simulation Algorithm Ontology
86 KTAO Kidney Tissue Atlas Ontology
87 LINCS-CLOview CLO LINCS view
88 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
89 MAMO Mathematical modeling ontology
90 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
91 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
92 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
93 MFOMD Mental Disease Ontology
94 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
95 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
96 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
97 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
98 MMUSDV Mouse Developmental Stages
99 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
100 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
101 MONDO Monarch Disease Ontology
102 MOP Molecular Process Ontology
103 MP Mammalian Phenotype http://purl.obolibrary.org/obo/MP_0000202
104 MPATH Mouse pathology ontology
105 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
106 MPIO Minimum PDDI Information Ontology
107 MRO MHC Restriction Ontology
108 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
109 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
110 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
111 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
112 NCRO Non-Coding RNA Ontology
113 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
114 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
115 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
116 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
117 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
118 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
119 OARCS Ontology of Arthropod Circulatory Systems
120 OBA Ontology of Biological Attributes
121 OBCS Ontology of Biological and Clinical Statistics
122 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
123 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
124 OBIB Ontology for Biobanking
125 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
126 OboInOwl OboInOwl OBO Format metamodel
127 OCMR Ontology of Chinese Medicine for Rheumatism
128 OCVDAE Ontology of Cardiovascular Drug Adverse Events
129 ODAE Ontology of Drug Adverse Events
130 ODNAE Ontologyof Drug Neuropathy Adverse Events
131 OGG The Ontology of Genes and Genomes
132 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
133 OGG-Bru Ontology of Genes and Genomes - Brucella
134 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
135 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
136 OGG-Dr Ontology of Genes and Genomes - Zebrafish
137 OGG-Mm Ontology of Genes and Genomes - Mouse
138 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
139 OGG-Sc Ontology of Genes and Genomes - Yeast
140 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
141 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
142 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
143 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
144 OHMI Ontology of Host-Microbiome Interactions
145 OHPI Ontology of Host-Pathogen Interactions
146 OLATDV Medaka Developmental Stages
147 OLOBO Ontology for Linking Biological and Medical Ontologies
148 OMIABIS Ontologized MIABIS
149 OMIT Ontology for MIRNA Target
150 OMP Ontology of Microbial Phenotypes
151 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
152 ONTONEO Obstetric and Neonatal Ontology
153 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
154 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
155 OPMI Ontology of Precision Medicine and Investigation
156 OSCI Ontology for Stem Cell Investigations
157 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
158 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
159 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
160 PDRO The Prescription of Drugs Ontology
161 PDUMDV Platynereis Developmental Stages
162 PECO Plant Experimental Conditions Ontology
163 PHIPO Pathogen Host Interaction Phenotype Ontology
164 PLANA planaria-ontology
165 PLANP Planarian Phenotype Ontology
166 PNO Proper Name Ontology
167 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
168 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
169 PPO Plant Phenology Ontology
170 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
171 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
172 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
173 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
174 RNAO RNA ontology
175 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
176 ROLEO Role Ontology
177 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
178 RXNO Name Reaction Ontology
179 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
180 SBO Systems Biology Ontology
181 SDGIO Sustainable Development Goals Interface Ontology
182 SIBO Social Insect Behavior Ontology
183 SIO Semanticscience Integrated Ontology
184 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
185 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
186 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
187 STATO The Statistical Methods Ontology
188 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
189 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
190 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
191 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
192 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
193 TCMDPO Traditional Chiinese Medicine DPO
194 TFClass_human Ontology of Human Transcription Factors
195 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
196 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
197 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
198 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
199 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
200 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
201 UPHENO Unified phenotype ontology (uPheno)
202 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
203 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
204 VICO Vaccination Informed Consent Ontology
205 VIO Vaccine Investigation Ontology
206 VIVO-ISF VIVO-ISF
207 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
208 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
209 VT Vertebrate trait ontology
210 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
211 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
212 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
213 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
214 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
215 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
216 XPO Xenopus Phenotype Ontology
217 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
218 ZECO Zebrafish Experimental Conditions Ontology
219 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
220 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022