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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 APOLLO_SV Apollo Structured Vocabulary
8 ARO Antibiotic Resistance Ontology
9 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
10 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
11 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
12 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
13 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
14 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
15 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
16 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
17 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
18 CEPH Cephalopod Ontology
19 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
20 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
21 CHMO Chemical Methods Ontology
22 CIO Confidence Information Ontology
23 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
24 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
25 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
26 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
27 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
28 CRO Contributor Role Ontology
29 CTCAE-OAEview OAE CTCAE view
30 CTENO Ctenophore Ontology
31 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
32 d-acts Ontology of Document Acts
33 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
34 DDPHENO Dictyostelium discoideum phenotype ontology
35 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
36 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
37 DPO Drosophila Phenotype Ontology
38 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
39 DUO The Data Use Ontology
40 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
41 ECOCORE An ontology of core ecological entities
42 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
43 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
44 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
45 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
46 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
47 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
48 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
49 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
50 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
51 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
52 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
53 EUPATH EuPathDB ontology
54 ExO Exposure ontology
55 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
56 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
57 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
58 FBCV FlyBase Controlled Vocabulary
59 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
60 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
61 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
62 FLOPO Flora Phenotype Ontology
63 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
64 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
65 FOODON FOODON
66 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
67 GAZ Gazetteer
68 GENEPIO Genomic Epidemiology Ontology
69 GENO Genotype Ontology
70 GEO Geographical Entity Ontology
71 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
72 GRO Cereal Plant Gross Anatomy
73 HANCESTRO Human Ancestry Ontology
74 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
75 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
76 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
77 HSAPDV Human Developmental Stages
78 HTN Hypertension Ontology
79 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
80 IAO-Onto-Meta IAO Ontology Metadata
81 ICDO International Classification of Disease Ontology
82 ICEO Integrative and Conjugative Element Ontology
83 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
84 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
85 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
86 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
87 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
88 KISAO Kinetic Simulation Algorithm Ontology
89 KTAO Kidney Tissue Atlas Ontology
90 LINCS-CLOview CLO LINCS view
91 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
92 MAMO Mathematical modeling ontology
93 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
94 MCO Microbial Conditions Ontology
95 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
96 MFMO Mammalian Feeding Muscle Ontology
97 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
98 MFOMD Mental Disease Ontology
99 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
100 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
101 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
102 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
103 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
104 MMUSDV Mouse Developmental Stages
105 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
106 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
107 MONDO Mondo Disease Ontology
108 MOP Molecular Process Ontology
109 MP Mammalian Phenotype http://purl.obolibrary.org/obo/MP_0000202
110 MPATH Mouse pathology ontology
111 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
112 MPIO Minimum PDDI Information Ontology
113 MRO MHC Restriction Ontology
114 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
115 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
116 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
117 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
118 NCRO Non-Coding RNA Ontology
119 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
120 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
121 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
122 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
123 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
124 NOMEN NOMEN - A nomenclatural ontology for biological names
125 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
126 OARCS Ontology of Arthropod Circulatory Systems
127 OBA Ontology of Biological Attributes
128 OBCS Ontology of Biological and Clinical Statistics
129 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
130 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
131 OBIB Ontology for Biobanking
132 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
133 OboInOwl OboInOwl OBO Format metamodel
134 OCMR Ontology of Chinese Medicine for Rheumatism
135 OCVDAE Ontology of Cardiovascular Drug Adverse Events
136 ODAE Ontology of Drug Adverse Events
137 ODNAE Ontologyof Drug Neuropathy Adverse Events
138 OGG The Ontology of Genes and Genomes
139 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
140 OGG-Bru Ontology of Genes and Genomes - Brucella
141 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
142 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
143 OGG-Dr Ontology of Genes and Genomes - Zebrafish
144 OGG-Mm Ontology of Genes and Genomes - Mouse
145 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
146 OGG-Sc Ontology of Genes and Genomes - Yeast
147 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
148 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
149 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
150 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
151 OHMI Ontology of Host-Microbiome Interactions
152 OHPI Ontology of Host-Pathogen Interactions
153 OLAM Ontology of Laboratory Animal Medicine
154 OLATDV Medaka Developmental Stages
155 OLOBO Ontology for Linking Biological and Medical Ontologies
156 OMIABIS Ontologized MIABIS
157 OMIT Ontology for MIRNA Target
158 OMP Ontology of Microbial Phenotypes
159 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
160 ONTONEO Obstetric and Neonatal Ontology
161 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
162 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
163 OPMI Ontology of Precision Medicine and Investigation
164 OSCI Ontology for Stem Cell Investigations
165 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
166 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
167 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
168 PDRO The Prescription of Drugs Ontology
169 PDUMDV Platynereis Developmental Stages
170 PECO Plant Experimental Conditions Ontology
171 PHIPO Pathogen Host Interaction Phenotype Ontology
172 PLANA planaria-ontology
173 PLANP Planarian Phenotype Ontology
174 PNO Proper Name Ontology
175 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
176 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
177 PPO Plant Phenology Ontology
178 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
179 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
180 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
181 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
182 RNAO RNA ontology
183 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
184 ROLEO Role Ontology
185 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
186 RXNO Name Reaction Ontology
187 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
188 SBO Systems Biology Ontology
189 SDGIO Sustainable Development Goals Interface Ontology
190 SIBO Social Insect Behavior Ontology
191 SIO Semanticscience Integrated Ontology
192 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
193 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
194 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
195 STATO The Statistical Methods Ontology
196 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
197 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
198 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
199 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
200 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
201 TCMDPO Traditional Chiinese Medicine DPO
202 TFClass_human Ontology of Human Transcription Factors
203 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
204 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
205 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
206 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
207 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
208 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
209 UPHENO Unified phenotype ontology (uPheno)
210 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
211 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
212 VICO Vaccination Informed Consent Ontology
213 VIO Vaccine Investigation Ontology
214 VIVO-ISF VIVO-ISF
215 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
216 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
217 VT Vertebrate trait ontology
218 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
219 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
220 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
221 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
222 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
223 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
224 XPO Xenopus Phenotype Ontology
225 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
226 ZECO Zebrafish Experimental Conditions Ontology
227 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
228 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
229 ZP Zebrafish Phenotype Ontology