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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 AMPHX The Amphioxus Development and Anatomy Ontology
6 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
7 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
8 APOLLO_SV Apollo Structured Vocabulary
9 ARO Antibiotic Resistance Ontology
10 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
11 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
12 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
13 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
14 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
15 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
16 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
17 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
18 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
19 CEPH Cephalopod Ontology
20 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
21 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
22 CHIRO CHEBI Integrated Role Ontology
23 CHMO Chemical Methods Ontology
24 CIO Confidence Information Ontology
25 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
26 CLAO Collembola Anatomy Ontology
27 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
28 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
29 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
30 CLYH Clytia hemisphaerica Development and Anatomy Ontology
31 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
32 COB Core Ontology for Biology and Biomedicine
33 CRO Contributor Role Ontology
34 CTCAE-OAEview OAE CTCAE view
35 CTENO Ctenophore Ontology
36 CTO CTO: Core Ontology of Clinical Trials
37 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
38 d-acts Ontology of Document Acts
39 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
40 DDPHENO Dictyostelium discoideum phenotype ontology
41 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
42 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
43 DPO Drosophila Phenotype Ontology
44 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
45 DUO Data Use Ontology
46 ECAO The Echinoderm Anatomy and Development Ontology
47 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
48 ECTO Environmental conditions, treatments and exposures ontology
49 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
50 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
51 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
52 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
53 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
54 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
55 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
56 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
57 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
58 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
59 EUPATH VEuPathDB ontology
60 ExO Exposure ontology
61 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
62 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
63 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
64 FBCV FlyBase Controlled Vocabulary
65 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
66 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
67 FIDEO Food Interactions with Drugs Evidence Ontology
68 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
69 FLOPO Flora Phenotype Ontology
70 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
71 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
72 FOBI FOBI
73 FOODON FOODON
74 FOVT FuTRES Ontology of Vertebrate Traits
75 GAZ Gazetteer
76 GECKO Genomics Cohorts Knowledge Ontology
77 GENEPIO Genomic Epidemiology Ontology
78 GENO Genotype Ontology
79 GEO Geographical Entity Ontology
80 GNO Glycan Naming and Subsumption Ontology (GNOme)
81 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
82 GRO Cereal Plant Gross Anatomy
83 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
84 HANCESTRO Human Ancestry Ontology
85 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
86 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
87 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
88 HSAPDV Human Developmental Stages
89 HSO Health Surveillance Ontology
90 HTN Hypertension Ontology
91 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
92 IAO-Onto-Meta IAO Ontology Metadata
93 ICDO International Classification of Disease Ontology
94 ICEO Integrative and Conjugative Element Ontology
95 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
96 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
97 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
98 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
99 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
100 KISAO Kinetic Simulation Algorithm Ontology
101 KTAO Kidney Tissue Atlas Ontology
102 LINCS-CLOview CLO LINCS view
103 LTHIDO LTHIDO
104 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
105 MAMO Mathematical modeling ontology
106 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
107 MAXO Medical Action Ontology
108 MCO Microbial Conditions Ontology
109 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
110 MFMO Mammalian Feeding Muscle Ontology
111 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
112 MFOMD Mental Disease Ontology
113 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
114 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
115 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
116 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
117 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
118 MMUSDV Mouse Developmental Stages
119 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
120 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
121 MONDO Mondo Disease Ontology
122 MOP Molecular Process Ontology
123 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
124 MPATH Mouse pathology ontology
125 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
126 MPIO Minimum PDDI Information Ontology
127 MRO MHC Restriction Ontology
128 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
129 NCRO Non-Coding RNA Ontology
130 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
131 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
132 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
133 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
134 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
135 NOMEN NOMEN - A nomenclatural ontology for biological names
136 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
137 OARCS Ontology of Arthropod Circulatory Systems
138 OBA Ontology of Biological Attributes
139 OBCS Ontology of Biological and Clinical Statistics
140 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
141 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
142 OBIB Ontology for Biobanking
143 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
144 OboInOwl OboInOwl OBO Format metamodel
145 OCE Ontology of Chemical Elements
146 OCMR Ontology of Chinese Medicine for Rheumatism
147 OCVDAE Ontology of Cardiovascular Drug Adverse Events
148 ODAE Ontology of Drug Adverse Events
149 ODNAE Ontologyof Drug Neuropathy Adverse Events
150 OGG The Ontology of Genes and Genomes
151 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
152 OGG-Bru Ontology of Genes and Genomes - Brucella
153 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
154 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
155 OGG-Dr Ontology of Genes and Genomes - Zebrafish
156 OGG-Mm Ontology of Genes and Genomes - Mouse
157 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
158 OGG-Sc Ontology of Genes and Genomes - Yeast
159 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
160 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
161 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
162 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
163 OHMI Ontology of Host-Microbiome Interactions
164 OHPI Ontology of Host Pathogen Interactions
165 OLAM Ontology of Laboratory Animal Medicine
166 OLATDV Medaka Developmental Stages
167 OLOBO Ontology for Linking Biological and Medical Ontologies
168 OMIABIS Ontologized MIABIS
169 OMIT Ontology for MIRNA Target
170 OMO OBO Metadata Ontology
171 OMP Ontology of Microbial Phenotypes
172 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
173 ONE Ontology for Nutritional Epidemiology
174 ONS Ontology for Nutritional Studies
175 ONTONEO Obstetric and Neonatal Ontology
176 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
177 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
178 OPMI Ontology of Precision Medicine and Investigation
179 ORNASEQ Ontology of RNA Sequencing
180 OSCI Ontology for Stem Cell Investigations
181 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
182 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
183 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
184 PDRO The Prescription of Drugs Ontology
185 PDUMDV Platynereis Developmental Stages
186 PECO Plant Experimental Conditions Ontology
187 PHIPO Pathogen Host Interaction Phenotype Ontology
188 PLANA planaria-ontology
189 PLANP Planarian Phenotype Ontology
190 PNO Proper Name Ontology
191 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
192 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
193 PPO Plant Phenology Ontology
194 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
195 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
196 PSDO Performance Summary Display Ontology
197 PSO Plant Stress Ontology
198 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
199 RBO Radiation Biology Ontology
200 Reactome Reactome Ontology
201 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
202 RNAO RNA ontology
203 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
204 ROLEO Role Ontology
205 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
206 RXNO Name Reaction Ontology
207 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
208 SDGIO Sustainable Development Goals Interface Ontology
209 SEPIO Scientific Evidence and Provenance Information Ontology
210 SIBO Social Insect Behavior Ontology
211 SIO Semanticscience Integrated Ontology
212 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
213 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
214 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
215 STATO The Statistical Methods Ontology
216 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
217 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
218 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
219 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
220 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
221 TCMDPO Traditional Chiinese Medicine DPO
222 TFClass_human Ontology of Human Transcription Factors
223 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
224 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
225 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
226 TSO Transportation System Ontology
227 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
228 TXPO Toxic Process Ontology
229 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
230 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
231 UPA Unipathway
232 UPHENO Unified phenotype ontology (uPheno)
233 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
234 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
235 VICO Vaccination Informed Consent Ontology
236 VIO Vaccine Investigation Ontology
237 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
238 VIVO-ISF VIVO-ISF
239 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
240 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
241 VT Vertebrate trait ontology
242 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
243 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
244 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
245 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
246 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
247 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
248 XPO Xenopus Phenotype Ontology
249 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
250 ZECO Zebrafish Experimental Conditions Ontology
251 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
252 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
253 ZP Zebrafish Phenotype Ontology