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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
8 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
9 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
10 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
11 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
12 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
13 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
14 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
15 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
16 CEPH Cephalopod Ontology
17 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
18 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
19 CHMO Chemical Methods Ontology
20 CIO Confidence Information Ontology
21 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
22 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
23 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
24 CTCAE-OAEview OAE CTCAE view
25 CTENO Ctenophore Ontology
26 d-acts Ontology of Document Acts
27 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
28 DDPHENO Dictyostelium discoideum phenotype
29 DIDEO Drug Interaction and Evidence Ontology
30 DINTO The Drug-Drug Interactions Ontology
31 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
32 DPO Drosophila Phenotype Ontology
33 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
34 DUO The Data Use Ontology
35 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
36 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
37 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
38 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
39 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
40 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
41 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
42 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
43 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
44 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
45 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
46 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
47 ExO Exposure ontology
48 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
49 FBBI Biological imaging methods http://purl.obolibrary.org/obo/FBbi_00000016
50 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
51 FBCV FlyBase Controlled Vocabulary
52 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
53 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
54 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
55 FLOPO Flora Phenotype Ontology
56 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
57 FMA Foundational Model of Anatomy (subset) http://purl.obolibrary.org/obo/FMA_27742
58 FOODON FOODON
59 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
60 GAZ Gazetteer
61 GENEPIO Genomic Epidemiology Ontology
62 GENO Genotype Ontology
63 GEO Geographical Entity Ontology
64 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
65 GRO Cereal Plant Gross Anatomy
66 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
67 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
68 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
69 HSAPDV Human Developmental Stages
70 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
71 IAO-Onto-Meta IAO Ontology Metadata
72 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
73 IDO Infectious disease http://purl.obolibrary.org/obo/IDO_0000558
74 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
75 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
76 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
77 KISAO Kinetic Simulation Algorithm Ontology
78 LINCS-CLOview CLO LINCS view
79 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
80 MAMO Mathematical modeling ontology
81 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
82 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
83 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
84 MFOMD MFO Mental Disease Ontology
85 MI Molecular interactions http://purl.obolibrary.org/obo/MI_0659
86 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
87 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
88 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
89 MMUSDV Mouse Developmental Stages
90 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
91 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
92 MONDO Monarch Disease Ontology
93 MOP Molecular Process Ontology
94 MP Mammalian phenotype http://purl.obolibrary.org/obo/MP_0000202
95 MPATH Mouse pathology
96 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
97 MPIO Minimum PDDI Information Ontology
98 MRO MHC Restriction Ontology
99 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
100 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
101 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
102 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
103 NCRO Non-Coding RNA Ontology
104 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
105 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
106 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
107 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
108 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
109 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
110 OARCS Ontology of Arthropod Circulatory Systems
111 OBA Ontology of Biological Attributes
112 OBCS Ontology of Biological and Clinical Statistics
113 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
114 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
115 OBIB Ontology for Biobanking
116 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
117 OboInOwl OboInOwl OBO Format metamodel
118 OCMR Ontology of Chinese Medicine for Rheumatism
119 OCVDAE Ontology of Cardiovascular Drug Adverse Events
120 ODNAE Ontologyof Drug Neuropathy Adverse Events
121 OGG The Ontology of Genes and Genomes
122 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
123 OGG-Bru Ontology of Genes and Genomes - Brucella
124 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
125 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
126 OGG-Dr Ontology of Genes and Genomes - Zebrafish
127 OGG-Mm Ontology of Genes and Genomes - Mouse
128 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
129 OGG-Sc Ontology of Genes and Genomes - Yeast
130 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
131 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
132 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
133 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
134 OHMI Ontology of Host-Microbiome Interactions
135 OHPI Ontology of Host-Pathogen Interactions
136 OLATDV Medaka Developmental Stages
137 OLOBO Ontology for Linking Biological and Medical Ontologies
138 OMIABIS Ontologized MIABIS
139 OMIT Ontology for MIRNA Target
140 OMP Ontology of Microbial Phenotypes
141 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
142 ONTONEO Obstetric and Neonatal Ontology
143 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
144 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
145 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
146 PATO Phenotypic quality http://purl.obolibrary.org/obo/PATO_0000054
147 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
148 PDRO The Prescription of Drugs Ontology
149 PDUMDV Platynereis Developmental Stages
150 PECO Plant Experimental Conditions Ontology
151 PLANA planaria-ontology
152 PNO Proper Name Ontology
153 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
154 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
155 PPO Plant Phenology Ontology
156 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
157 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
158 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
159 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
160 RNAO RNA ontology
161 RO Relations Ontology http://purl.obolibrary.org/obo/CARO_0000006
162 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
163 RXNO Name Reaction Ontology
164 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
165 SBO Systems Biology
166 SIBO Social Insect Behavior Ontology
167 SIO Semanticscience Integrated Ontology
168 SO Sequence types and features http://purl.obolibrary.org/obo/SO_0000644
169 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
170 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
171 STATO The Statistical Methods Ontology
172 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
173 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
174 TADS Tick gross anatomy http://purl.obolibrary.org/obo/TADS_0000134
175 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
176 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
177 TCMDPO Traditional Chiinese Medicine DPO
178 TFClass_human Ontology of Human Transcription Factors
179 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
180 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
181 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
182 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
183 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
184 UO Units of measurement http://purl.obolibrary.org/obo/UO_0000256
185 UPHENO Combined phenotype ontology
186 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
187 VHOG verteberate Homologous Organ Groups http://purl.obolibrary.org/obo/VHOG_0001198
188 VICO Vaccination Informed Consent Ontology
189 VIVO-ISF VIVO-ISF
190 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
191 VSAO Vertebrate Musculoskeletal Anatomy Ontology http://purl.obolibrary.org/obo/VAO_0000004
192 VT Vertebrate trait
193 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
194 WBbt C. elegans gross anatomy http://purl.obolibrary.org/obo/WBbt_0006365
195 WBLS C. elegans development http://purl.obolibrary.org/obo/WBls_0000074
196 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
197 XAO Xenopus anatomy and development http://purl.obolibrary.org/obo/XAO_0004086
198 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
199 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
200 ZECO Zebrafish Experimental Conditions Ontology
201 ZFA Zebrafish anatomy and development http://purl.obolibrary.org/obo/ZFA_0000027
202 ZFS Zebrafish developmental stages http://purl.obolibrary.org/obo/ZFS_0000022