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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 APOLLO_SV Apollo Structured Vocabulary
8 ARO Antibiotic Resistance Ontology
9 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
10 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
11 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
12 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
13 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
14 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
15 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
16 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
17 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
18 CEPH Cephalopod Ontology
19 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
20 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
21 CHMO Chemical Methods Ontology
22 CIO Confidence Information Ontology
23 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
24 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
25 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
26 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
27 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
28 CRO Contributor Role Ontology
29 CTCAE-OAEview OAE CTCAE view
30 CTENO Ctenophore Ontology
31 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
32 d-acts Ontology of Document Acts
33 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
34 DDPHENO Dictyostelium discoideum phenotype ontology
35 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
36 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
37 DPO Drosophila Phenotype Ontology
38 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
39 DUO The Data Use Ontology
40 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
41 ECOCORE An ontology of core ecological entities
42 ECTO Environmental conditions, treatments and exposures ontology
43 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
44 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
45 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
46 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
47 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
48 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
49 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
50 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
51 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
52 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
53 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
54 EUPATH EuPathDB ontology
55 ExO Exposure ontology
56 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
57 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
58 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
59 FBCV FlyBase Controlled Vocabulary
60 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
61 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
62 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
63 FLOPO Flora Phenotype Ontology
64 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
65 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
66 FOODON FOODON
67 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
68 GAZ Gazetteer
69 GENEPIO Genomic Epidemiology Ontology
70 GENO Genotype Ontology
71 GEO Geographical Entity Ontology
72 GNO Glycan Naming Ontology
73 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
74 GRO Cereal Plant Gross Anatomy
75 HANCESTRO Human Ancestry Ontology
76 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
77 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
78 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
79 HSAPDV Human Developmental Stages
80 HTN Hypertension Ontology
81 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
82 IAO-Onto-Meta IAO Ontology Metadata
83 ICDO International Classification of Disease Ontology
84 ICEO Integrative and Conjugative Element Ontology
85 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
86 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
87 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
88 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
89 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
90 KISAO Kinetic Simulation Algorithm Ontology
91 KTAO Kidney Tissue Atlas Ontology
92 LABO clinical LABoratory Ontology
93 LINCS-CLOview CLO LINCS view
94 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
95 MAMO Mathematical modeling ontology
96 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
97 MCO Microbial Conditions Ontology
98 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
99 MFMO Mammalian Feeding Muscle Ontology
100 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
101 MFOMD Mental Disease Ontology
102 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
103 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
104 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
105 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
106 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
107 MMUSDV Mouse Developmental Stages
108 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
109 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
110 MONDO Mondo Disease Ontology
111 MOP Molecular Process Ontology
112 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
113 MPATH Mouse pathology ontology
114 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
115 MPIO Minimum PDDI Information Ontology
116 MRO MHC Restriction Ontology
117 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
118 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
119 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
120 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
121 NCRO Non-Coding RNA Ontology
122 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
123 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
124 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
125 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
126 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
127 NOMEN NOMEN - A nomenclatural ontology for biological names
128 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
129 OARCS Ontology of Arthropod Circulatory Systems
130 OBA Ontology of Biological Attributes
131 OBCS Ontology of Biological and Clinical Statistics
132 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
133 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
134 OBIB Ontology for Biobanking
135 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
136 OboInOwl OboInOwl OBO Format metamodel
137 OCMR Ontology of Chinese Medicine for Rheumatism
138 OCVDAE Ontology of Cardiovascular Drug Adverse Events
139 ODAE Ontology of Drug Adverse Events
140 ODNAE Ontologyof Drug Neuropathy Adverse Events
141 OGG The Ontology of Genes and Genomes
142 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
143 OGG-Bru Ontology of Genes and Genomes - Brucella
144 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
145 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
146 OGG-Dr Ontology of Genes and Genomes - Zebrafish
147 OGG-Mm Ontology of Genes and Genomes - Mouse
148 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
149 OGG-Sc Ontology of Genes and Genomes - Yeast
150 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
151 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
152 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
153 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
154 OHMI Ontology of Host-Microbiome Interactions
155 OHPI Ontology of Host Pathogen Interactions
156 OLAM Ontology of Laboratory Animal Medicine
157 OLATDV Medaka Developmental Stages
158 OLOBO Ontology for Linking Biological and Medical Ontologies
159 OMIABIS Ontologized MIABIS
160 OMIT Ontology for MIRNA Target
161 OMP Ontology of Microbial Phenotypes
162 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
163 ONTONEO Obstetric and Neonatal Ontology
164 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
165 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
166 OPMI Ontology of Precision Medicine and Investigation
167 ORNASEQ Ontology of RNA Sequencing
168 OSCI Ontology for Stem Cell Investigations
169 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
170 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
171 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
172 PDRO The Prescription of Drugs Ontology
173 PDUMDV Platynereis Developmental Stages
174 PECO Plant Experimental Conditions Ontology
175 PHIPO Pathogen Host Interaction Phenotype Ontology
176 PLANA planaria-ontology
177 PLANP Planarian Phenotype Ontology
178 PNO Proper Name Ontology
179 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
180 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
181 PPO Plant Phenology Ontology
182 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
183 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
184 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
185 Reactome Reactome Ontology
186 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
187 RNAO RNA ontology
188 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
189 ROLEO Role Ontology
190 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
191 RXNO Name Reaction Ontology
192 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
193 SBO Systems Biology Ontology
194 SDGIO Sustainable Development Goals Interface Ontology
195 SEPIO Scientific Evidence and Provenance Information Ontology
196 SIBO Social Insect Behavior Ontology
197 SIO Semanticscience Integrated Ontology
198 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
199 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
200 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
201 STATO The Statistical Methods Ontology
202 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
203 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
204 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
205 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
206 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
207 TCMDPO Traditional Chiinese Medicine DPO
208 TFClass_human Ontology of Human Transcription Factors
209 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
210 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
211 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
212 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
213 TXPO Toxic Process Ontology
214 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
215 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
216 UPA Unipathway
217 UPHENO Unified phenotype ontology (uPheno)
218 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
219 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
220 VICO Vaccination Informed Consent Ontology
221 VIO Vaccine Investigation Ontology
222 VIVO-ISF VIVO-ISF
223 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
224 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
225 VT Vertebrate trait ontology
226 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
227 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
228 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
229 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
230 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
231 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
232 XPO Xenopus Phenotype Ontology
233 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
234 ZECO Zebrafish Experimental Conditions Ontology
235 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
236 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
237 ZP Zebrafish Phenotype Ontology