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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 ARO Antibiotic Resistance Ontology
8 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
9 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
10 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
11 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
12 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
13 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
14 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
15 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
16 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
17 CEPH Cephalopod Ontology
18 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
19 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
20 CHMO Chemical Methods Ontology
21 CIO Confidence Information Ontology
22 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
23 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
24 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
25 CRO Contributor Role Ontology
26 CTCAE-OAEview OAE CTCAE view
27 CTENO Ctenophore Ontology
28 d-acts Ontology of Document Acts
29 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
30 DDPHENO Dictyostelium discoideum phenotype ontology
31 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
32 DINTO The Drug-Drug Interactions Ontology
33 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
34 DPO Drosophila Phenotype Ontology
35 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
36 DUO The Data Use Ontology
37 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
38 ECOCORE An ontology of core ecological entities
39 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
40 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
41 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
42 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
43 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
44 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
45 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
46 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
47 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
48 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
49 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
50 EUPATH EuPathDB ontology
51 ExO Exposure ontology
52 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
53 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
54 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
55 FBCV FlyBase Controlled Vocabulary
56 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
57 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
58 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
59 FLOPO Flora Phenotype Ontology
60 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
61 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
62 FOODON FOODON
63 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
64 GAZ Gazetteer
65 GENEPIO Genomic Epidemiology Ontology
66 GENO Genotype Ontology
67 GEO Geographical Entity Ontology
68 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
69 GRO Cereal Plant Gross Anatomy
70 HANCESTRO Human Ancestry Ontology
71 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
72 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
73 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
74 HSAPDV Human Developmental Stages
75 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
76 IAO-Onto-Meta IAO Ontology Metadata
77 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
78 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
79 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
80 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
81 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
82 KISAO Kinetic Simulation Algorithm Ontology
83 KTAO Kidney Tissue Atlas Ontology
84 LINCS-CLOview CLO LINCS view
85 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
86 MAMO Mathematical modeling ontology
87 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
88 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
89 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
90 MFOMD Mental Disease Ontology
91 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
92 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
93 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
94 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
95 MMUSDV Mouse Developmental Stages
96 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
97 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
98 MONDO Monarch Disease Ontology
99 MOP Molecular Process Ontology
100 MP Mammalian phenotype http://purl.obolibrary.org/obo/MP_0000202
101 MPATH Mouse pathology
102 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
103 MPIO Minimum PDDI Information Ontology
104 MRO MHC Restriction Ontology
105 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
106 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
107 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
108 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
109 NCRO Non-Coding RNA Ontology
110 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
111 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
112 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
113 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
114 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
115 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
116 OARCS Ontology of Arthropod Circulatory Systems
117 OBA Ontology of Biological Attributes
118 OBCS Ontology of Biological and Clinical Statistics
119 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
120 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
121 OBIB Ontology for Biobanking
122 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
123 OboInOwl OboInOwl OBO Format metamodel
124 OCMR Ontology of Chinese Medicine for Rheumatism
125 OCVDAE Ontology of Cardiovascular Drug Adverse Events
126 ODAE Ontology of Drug Adverse Events
127 ODNAE Ontologyof Drug Neuropathy Adverse Events
128 OGG The Ontology of Genes and Genomes
129 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
130 OGG-Bru Ontology of Genes and Genomes - Brucella
131 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
132 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
133 OGG-Dr Ontology of Genes and Genomes - Zebrafish
134 OGG-Mm Ontology of Genes and Genomes - Mouse
135 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
136 OGG-Sc Ontology of Genes and Genomes - Yeast
137 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
138 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
139 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
140 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
141 OHMI Ontology of Host-Microbiome Interactions
142 OHPI Ontology of Host-Pathogen Interactions
143 OLATDV Medaka Developmental Stages
144 OLOBO Ontology for Linking Biological and Medical Ontologies
145 OMIABIS Ontologized MIABIS
146 OMIT Ontology for MIRNA Target
147 OMP Ontology of Microbial Phenotypes
148 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
149 ONTONEO Obstetric and Neonatal Ontology
150 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
151 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
152 OPMI Ontology of Precision Medicine and Investigation
153 OSCI Ontology for Stem Cell Investigations
154 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
155 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
156 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
157 PDRO The Prescription of Drugs Ontology
158 PDUMDV Platynereis Developmental Stages
159 PECO Plant Experimental Conditions Ontology
160 PLANA planaria-ontology
161 PNO Proper Name Ontology
162 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
163 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
164 PPO Plant Phenology Ontology
165 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
166 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
167 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
168 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
169 RNAO RNA ontology
170 RO Relations Ontology http://purl.obolibrary.org/obo/CARO_0000006
171 ROLEO Role Ontology
172 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
173 RXNO Name Reaction Ontology
174 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
175 SBO Systems Biology
176 SDGIO Sustainable Development Goals Interface Ontology
177 SIBO Social Insect Behavior Ontology
178 SIO Semanticscience Integrated Ontology
179 SO Sequence types and features http://purl.obolibrary.org/obo/SO_0000644
180 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
181 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
182 STATO The Statistical Methods Ontology
183 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
184 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
185 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
186 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
187 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
188 TCMDPO Traditional Chiinese Medicine DPO
189 TFClass_human Ontology of Human Transcription Factors
190 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
191 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
192 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
193 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
194 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
195 UO Units of measurement http://purl.obolibrary.org/obo/UO_0000256
196 UPHENO Combined phenotype ontology
197 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
198 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
199 VICO Vaccination Informed Consent Ontology
200 VIO Vaccine Investigation Ontology
201 VIVO-ISF VIVO-ISF
202 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
203 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
204 VT Vertebrate trait
205 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
206 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
207 WBLS C. elegans development http://purl.obolibrary.org/obo/WBls_0000074
208 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
209 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
210 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
211 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
212 ZECO Zebrafish Experimental Conditions Ontology
213 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
214 ZFS Zebrafish developmental stages http://purl.obolibrary.org/obo/ZFS_0000022