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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AGRO Agronomy Ontology
8 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
9 AMPHX The Amphioxus Development and Anatomy Ontology
10 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
11 APOLLO_SV Apollo Structured Vocabulary
12 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
13 ARO Antibiotic Resistance Ontology
14 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
15 BAO BioAssay Ontology
16 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
17 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
18 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
19 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
20 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
21 BOOTStrep Gene Regulation Ontology
22 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
23 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
24 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
25 CCFO Common Coordinate Framework Ontology
26 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
27 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
28 CDNO Compositional Dietary Nutrition Ontology
29 CEPH Cephalopod Ontology
30 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
31 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
32 CHIRO CHEBI Integrated Role Ontology
33 CHMO Chemical Methods Ontology
34 CIDO Coronavirus Infectious Disease Ontology
35 CIO Confidence Information Ontology
36 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
37 CLAO Collembola Anatomy Ontology
38 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
39 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
40 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
41 CLYH Clytia hemisphaerica Development and Anatomy Ontology
42 CMF CranioMaxilloFacial ontology
43 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
44 COB Core Ontology for Biology and Biomedicine
45 COLAO Coleoptera Anatomy Ontology (COLAO)
46 CRO Contributor Role Ontology
47 CTCAE-OAEview OAE CTCAE view
48 CTENO Ctenophore Ontology
49 CTO CTO: Core Ontology of Clinical Trials
50 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
51 d-acts Ontology of Document Acts
52 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
53 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
54 DDPHENO Dictyostelium discoideum phenotype ontology
55 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
56 DINTO The Drug-Drug Interactions Ontology
57 DISDRIV Disease Drivers Ontology
58 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
59 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
60 DUO Data Use Ontology
61 ECAO The Echinoderm Anatomy and Development Ontology
62 ECO Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/ECO_0000321
63 ECOCORE An ontology of core ecological entities
64 ECTO Environmental conditions, treatments and exposures ontology
65 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
66 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
67 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
68 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
69 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
70 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
71 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
72 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
73 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
74 EPIO Epilepsy Ontology
75 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
76 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
77 EUPATH VEuPathDB ontology
78 EV eVOC (Expressed Sequence Annotation for Humans)
79 ExO Exposure ontology
80 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
81 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
82 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
83 FBcv FlyBase Controlled Vocabulary
84 FBcv Drosophila Phenotype Ontology
85 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
86 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
87 FIDEO Food Interactions with Drugs Evidence Ontology
88 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
89 FLOPO Flora Phenotype Ontology
90 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
91 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
92 FOBI Food-Biomarker Ontology
93 FOODON Food Ontology
94 FOVT FuTRES Ontology of Vertebrate Traits
95 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
96 GALLONT Plant Gall Ontology
97 GAZ Gazetteer
98 GECKO Genomics Cohorts Knowledge Ontology
99 GENEPIO Genomic Epidemiology Ontology
100 GENO Genotype Ontology
101 GEO Geographical Entity Ontology
102 GNO Glycan Naming and Subsumption Ontology (GNOme)
103 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
104 GRO Cereal Plant Gross Anatomy
105 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
106 HABRONATTUS Habronattus courtship
107 HANCESTRO Human Ancestry Ontology
108 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
109 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
110 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
111 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
112 HsapDv Human Developmental Stages
113 HSO Health Surveillance Ontology
114 HTN Hypertension Ontology
115 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
116 IAO-Onto-Meta IAO Ontology Metadata
117 ICDO International Classification of Disease Ontology
118 ICEO Integrative and Conjugative Element Ontology
119 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
120 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
121 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
122 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
123 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
124 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
125 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
126 IPR Protein Domains
127 KISAO Kinetic Simulation Algorithm Ontology
128 KTAO Kidney Tissue Atlas Ontology
129 LABO clinical LABoratory Ontology
130 LEPAO Lepidoptera Anatomy Ontology
131 LINCS-CLOview CLO LINCS view
132 LiPrO Lipid Ontology
133 LOGGERHEAD Loggerhead nesting
134 LTHIDO LTHIDO
135 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
136 MAMO Mathematical modeling ontology
137 MAO Multiple alignment
138 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
139 MAXO Medical Action Ontology
140 MCO Microbial Conditions Ontology
141 MCRO Model Card Report Ontology
142 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
143 MFMO Mammalian Feeding Muscle Ontology
144 MFO Medaka fish anatomy and development
145 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
146 MFOMD Mental Disease Ontology
147 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
148 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
149 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
150 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
151 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
152 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
153 MmusDv Mouse Developmental Stages
154 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
155 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
156 MONDO Mondo Disease Ontology
157 MOP Molecular Process Ontology
158 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
159 MPATH Mouse pathology ontology
160 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
161 MPIO Minimum PDDI Information Ontology
162 MRO MHC Restriction Ontology
163 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
164 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
165 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
166 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
167 ncithesaurus NCI Thesaurus
168 NCRO Non-Coding RNA Ontology
169 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
170 NFO NFO
171 NGBO Next Generation Biobanking Ontology
172 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
173 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
174 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
175 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
176 NOMEN NOMEN - A nomenclatural ontology for biological names
177 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
178 OARCS Ontology of Arthropod Circulatory Systems
179 OBA Ontology of Biological Attributes
180 OBCS Ontology of Biological and Clinical Statistics
181 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
182 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
183 OBIB Ontology for Biobanking
184 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
185 OboInOwl OboInOwl OBO Format metamodel
186 OBO_REL OBO relationship types (legacy)
187 OCCO Occupation Ontology
188 OCE Ontology of Chemical Elements
189 OCMR Ontology of Chinese Medicine for Rheumatism
190 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
191 OCVDAE Ontology of Cardiovascular Drug Adverse Events
192 ODAE Ontology of Drug Adverse Events
193 ODNAE Ontologyof Drug Neuropathy Adverse Events
194 OGG The Ontology of Genes and Genomes
195 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
196 OGG-Bac Ontology of Genes and Genomes-Bacteria
197 OGG-Base Ontology of Genes and Genomes-Base
198 OGG-Bru Ontology of Genes and Genomes - Brucella
199 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
200 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
201 OGG-Dr Ontology of Genes and Genomes - Zebrafish
202 OGG-Hs Ontology of Genes and Genomes-Human
203 OGG-Mm Ontology of Genes and Genomes - Mouse
204 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
205 OGG-Sc Ontology of Genes and Genomes - Yeast
206 OGG-Vir Ontology of Genes and Genomes - Viruses
207 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
208 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
209 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
210 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
211 OHMI Ontology of Host-Microbiome Interactions
212 OHPI Ontology of Host Pathogen Interactions
213 OLAM Ontology of Laboratory Animal Medicine
214 OlatDv Medaka Developmental Stages
215 OLOBO Ontology for Linking Biological and Medical Ontologies
216 OMIABIS Ontologized MIABIS
217 OMIT Ontology for MIRNA Target
218 OMO OBO Metadata Ontology
219 OMP Ontology of Microbial Phenotypes
220 OMRSE Ontology for Modeling and Representation of Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
221 ONE Ontology for Nutritional Epidemiology
222 ONS Ontology for Nutritional Studies
223 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
224 ONTONEO Obstetric and Neonatal Ontology
225 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
226 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
227 OPMI Ontology of Precision Medicine and Investigation
228 ORNASEQ Ontology of RNA Sequencing
229 OSCI Ontology for Stem Cell Investigations
230 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
231 PAO Plant Anatomy Ontology
232 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
233 PCL Provisional Cell Ontology
234 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
235 PDRO The Prescription of Drugs Ontology
236 PdumDv Platynereis Developmental Stages
237 PD_ST Platynereis stage ontology
238 PECO Plant Experimental Conditions Ontology
239 PGDSO Plant Growth and Development Stage
240 PHIPO Pathogen Host Interaction Phenotype Ontology
241 PLANA planaria-ontology
242 PLANP Planarian Phenotype Ontology
243 PLO Plasmodium life cycle
244 PNO Proper Name Ontology
245 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
246 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
247 PPO Plant Phenology Ontology
248 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
249 PROCO Process Chemistry Ontology
250 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
251 PSDO Performance Summary Display Ontology
252 PSO Plant Stress Ontology
253 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
254 RBO Radiation Biology Ontology
255 Reactome Reactome Ontology
256 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
257 RESID Protein covalent bond
258 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
259 RNAO RNA ontology
260 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
261 ROLEO Role Ontology
262 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
263 RXNO Name Reaction Ontology
264 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
265 SBO Systems Biology Ontology
266 SCDO Sickle Cell Disease Ontology
267 SDGIO Sustainable Development Goals Interface Ontology
268 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
269 SEPIO Scientific Evidence and Provenance Information Ontology
270 SIBO Social Insect Behavior Ontology
271 SIO Semanticscience Integrated Ontology
272 SLSO Space Life Sciences Ontology
273 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
274 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
275 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
276 STATO The Statistical Methods Ontology
277 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
278 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
279 T4FS terms4FAIRskills
280 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
281 TAHE Terminology of Anatomy of Human Embryology
282 TAHH Terminology of Anatomy of Human Histology
283 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
284 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
285 TCMDPO Traditional Chiinese Medicine DPO
286 TFClass_human Ontology of Human Transcription Factors
287 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
288 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
289 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
290 TSO Transportation System Ontology
291 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
292 TXPO Toxic Process Ontology
293 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
294 uberon-basic Uber anatomy ontology, basic version
295 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
296 uberon_depictions uberon_depictions
297 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
298 UPA Unipathway
299 UPHENO Unified phenotype ontology (uPheno)
300 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
301 VBO Vertebrate Breed Ontology
302 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
303 VICO Vaccination Informed Consent Ontology
304 VIDO Virus Infectious Disease Ontology
305 VIO Vaccine Investigation Ontology
306 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
307 VIVO-ISF VIVO-ISF
308 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
309 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
310 VT Vertebrate trait ontology
311 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
312 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
313 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
314 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
315 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
316 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
317 XL Cross-linker reagents ontology
318 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
319 XPO Xenopus Phenotype Ontology
320 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
321 ZEA Maize gross anatomy
322 ZECO Zebrafish Experimental Conditions Ontology
323 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
324 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
325 ZP Zebrafish Phenotype Ontology