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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
8 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
9 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
10 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
11 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
12 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
13 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
14 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
15 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
16 CEPH Cephalopod Ontology
17 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
18 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
19 CHMO Chemical Methods Ontology
20 CIO Confidence Information Ontology
21 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
22 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
23 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
24 CTCAE-OAEview OAE CTCAE view
25 CTENO Ctenophore Ontology
26 d-acts Ontology of Document Acts
27 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
28 DDPHENO Dictyostelium discoideum phenotype
29 DIDEO Drug Interaction and Evidence Ontology
30 DINTO The Drug-Drug Interactions Ontology
31 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
32 DPO Drosophila Phenotype Ontology
33 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
34 DUO The Data Use Ontology
35 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
36 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
37 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
38 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
39 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
40 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
41 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
42 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
43 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
44 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
45 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
46 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
47 ExO Exposure ontology
48 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
49 FBBI Biological imaging methods http://purl.obolibrary.org/obo/FBbi_00000016
50 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
51 FBcv FlyBase Controlled Vocabulary http://purl.obolibrary.org/obo/FBcv_0000172
52 FBCV FlyBase Controlled Vocabulary
53 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
54 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
55 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
56 FLOPO Flora Phenotype Ontology
57 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
58 FMA Foundational Model of Anatomy (subset) http://purl.obolibrary.org/obo/FMA_27742
59 FOODON FOODON
60 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
61 GAZ Gazetteer
62 GENEPIO Genomic Epidemiology Ontology
63 GENO Genotype Ontology
64 GEO Geographical Entity Ontology
65 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
66 GRO Cereal Plant Gross Anatomy
67 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
68 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
69 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
70 HSAPDV Human Developmental Stages
71 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
72 IAO-Onto-Meta IAO Ontology Metadata
73 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
74 IDO Infectious disease http://purl.obolibrary.org/obo/IDO_0000558
75 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
76 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
77 KISAO Kinetic Simulation Algorithm Ontology
78 LINCS-CLOview CLO LINCS view
79 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
80 MAMO Mathematical modeling ontology
81 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
82 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
83 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
84 MI Molecular interactions http://purl.obolibrary.org/obo/MI_0659
85 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
86 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
87 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
88 MMUSDV Mouse Developmental Stages
89 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
90 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
91 MONDO Monarch Disease Ontology
92 MOP Molecular Process Ontology
93 MP Mammalian phenotype http://purl.obolibrary.org/obo/MP_0000202
94 MPATH Mouse pathology
95 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
96 MRO MHC Restriction Ontology
97 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
98 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
99 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
100 NCIT NCI Thesaurus http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
101 NCRO Non-Coding RNA Ontology
102 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
103 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
104 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
105 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
106 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
107 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
108 OARCS Ontology of Arthropod Circulatory Systems
109 OBA Ontology of Biological Attributes
110 OBCS Ontology of Biological and Clinical Statistics
111 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
112 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
113 OBIB Ontology for Biobanking
114 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
115 OboInOwl OboInOwl OBO Format metamodel
116 OCMR Ontology of Chinese Medicine for Rheumatism
117 OCVDAE Ontology of Cardiovascular Drug Adverse Events
118 ODNAE Ontologyof Drug Neuropathy Adverse Events
119 OGG The Ontology of Genes and Genomes
120 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
121 OGG-Bru Ontology of Genes and Genomes - Brucella
122 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
123 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
124 OGG-Dr Ontology of Genes and Genomes - Zebrafish
125 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
126 OGG-Sc Ontology of Genes and Genomes - Yeast
127 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
128 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
129 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
130 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
131 OHMI Ontology of Host-Microbiome Interactions
132 OHPI Ontology of Host-Pathogen Interactions
133 OLATDV Medaka Developmental Stages
134 OLOBO Ontology for Linking Biological and Medical Ontologies
135 OMIABIS Ontologized MIABIS
136 OMIT Ontology for MIRNA Target
137 OMP Ontology of Microbial Phenotypes
138 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
139 ONTONEO Obstetric and Neonatal Ontology
140 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
141 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
142 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
143 PATO Phenotypic quality http://purl.obolibrary.org/obo/PATO_0000054
144 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
145 PDRO The Prescription of Drugs Ontology
146 PDUMDV Platynereis Developmental Stages
147 PLANA planaria-ontology
148 PNO Proper Name Ontology
149 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
150 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
151 PPO Plant Phenology Ontology
152 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
153 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
154 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
155 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
156 RNAO RNA ontology
157 RO Relations Ontology http://purl.obolibrary.org/obo/CARO_0000006
158 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
159 RXNO Name Reaction Ontology
160 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
161 SBO Systems Biology
162 SIBO Social Insect Behavior Ontology
163 SIO Semanticscience Integrated Ontology
164 SO Sequence types and features http://purl.obolibrary.org/obo/SO_0000644
165 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
166 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
167 STATO The Statistical Methods Ontology
168 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
169 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
170 TADS Tick gross anatomy http://purl.obolibrary.org/obo/TADS_0000134
171 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
172 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
173 TCMDPO Traditional Chiinese Medicine DPO
174 TFClass_human Ontology of Human Transcription Factors
175 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
176 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
177 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
178 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
179 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
180 UO Units of measurement http://purl.obolibrary.org/obo/UO_0000256
181 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
182 VHOG verteberate Homologous Organ Groups http://purl.obolibrary.org/obo/VHOG_0001198
183 VICO Vaccination Informed Consent Ontology
184 VIVO-ISF VIVO-ISF
185 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
186 VSAO Vertebrate Musculoskeletal Anatomy Ontology http://purl.obolibrary.org/obo/VAO_0000004
187 VT Vertebrate trait
188 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
189 WBbt C. elegans gross anatomy http://purl.obolibrary.org/obo/WBbt_0006365
190 WBLS C. elegans development http://purl.obolibrary.org/obo/WBls_0000074
191 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
192 XAO Xenopus anatomy and development http://purl.obolibrary.org/obo/XAO_0004086
193 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
194 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
195 ZECO Zebrafish Experimental Conditions Ontology
196 ZFA Zebrafish anatomy and development http://purl.obolibrary.org/obo/ZFA_0000027
197 ZFS Zebrafish developmental stages http://purl.obolibrary.org/obo/ZFS_0000022