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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AGRO Agronomy Ontology
4 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
5 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
6 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
7 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
8 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
9 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
10 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
11 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
12 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
13 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
14 CEPH Cephalopod Ontology
15 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
16 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
17 CHMO Chemical Methods Ontology
18 CIO Confidence Information Ontology
19 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
20 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
21 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
22 CTCAE-OAEview OAE CTCAE view
23 CTENO Ctenophore Ontology
24 d-acts Ontology of Document Acts
25 DDPHENO Dictyostelium discoideum phenotype
26 DIDEO Drug Interaction and Evidence Ontology
27 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
28 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
29 DUO The Data Use Ontology
30 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
31 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
32 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
33 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
34 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
35 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
36 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
37 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
38 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
39 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
40 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
41 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
42 FBBI Biological imaging methods http://purl.obolibrary.org/obo/FBbi_00000016
43 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
44 FBcv FlyBase Controlled Vocabulary http://purl.obolibrary.org/obo/FBcv_0000172
45 FBCV FlyBase Controlled Vocabulary
46 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
47 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
48 FLOPO Flora Phenotype Ontology
49 FMA Foundational Model of Anatomy (subset) http://purl.obolibrary.org/obo/FMA_27742
50 FOODON FOODON
51 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
52 GAZ Gazetteer
53 GENEPIO Genomic Epidemiology Ontology
54 GENO Genotype Ontology
55 GEO Geographical Entity Ontology
56 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
57 GRO Cereal Plant Gross Anatomy
58 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
59 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
60 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
61 HSAPDV Human Developmental Stages
62 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
63 IAO-Onto-Meta IAO Ontology Metadata
64 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
65 IDO Infectious disease http://purl.obolibrary.org/obo/IDO_0000558
66 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
67 KISAO Kinetic Simulation Algorithm Ontology
68 LINCS-CLOview CLO LINCS view
69 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
70 MAMO Mathematical modeling ontology
71 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
72 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
73 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
74 MI Molecular interactions http://purl.obolibrary.org/obo/MI_0659
75 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
76 MMUSDV Mouse Developmental Stages
77 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
78 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
79 MOP Molecular Process Ontology
80 MP Mammalian phenotype http://purl.obolibrary.org/obo/MP_0000202
81 MPATH Mouse pathology
82 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
83 MRO MHC Restriction Ontology
84 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
85 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
86 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
87 NCIT NCI Thesaurus http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
88 NCRO Non-Coding RNA Ontology
89 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
90 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
91 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
92 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
93 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
94 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
95 OARCS Ontology of Arthropod Circulatory Systems
96 OBA Ontology of Biological Attributes
97 OBCS Ontology of Biological and Clinical Statistics
98 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
99 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
100 OBIB Ontology for Biobanking
101 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
102 OboInOwl OboInOwl OBO Format metamodel
103 OCVDAE Ontology of Cardiovascular Drug Adverse Events
104 ODNAE Ontologyof Drug Neuropathy Adverse Events
105 OGG The Ontology of Genes and Genomes
106 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
107 OGG-Bru Ontology of Genes and Genomes - Brucella
108 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
109 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
110 OGG-Dr Ontology of Genes and Genomes - Zebrafish
111 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
112 OGG-Sc Ontology of Genes and Genomes - Yeast
113 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
114 OHPI Ontology of Host-Pathogen Interactions
115 OLATDV Medaka Developmental Stages
116 OMIABIS Ontologized MIABIS
117 OMP Ontology of Microbial Phenotypes
118 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
119 ONTONEO Obstetric and Neonatal Ontology
120 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
121 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
122 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
123 PATO Phenotypic quality http://purl.obolibrary.org/obo/PATO_0000054
124 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
125 PDRO The Prescription of Drugs Ontology
126 PDUMDV Platynereis Developmental Stages
127 PLANA planaria-ontology
128 PNO Proper Name Ontology
129 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
130 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
131 PPO Plant Phenology Ontology
132 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
133 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
134 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
135 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
136 RO Relations Ontology http://purl.obolibrary.org/obo/CARO_0000006
137 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
138 RXNO Name Reaction Ontology
139 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
140 SIBO Social Insect Behavior Ontology
141 SIO Semanticscience Integrated Ontology
142 SO Sequence types and features http://purl.obolibrary.org/obo/SO_0000644
143 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
144 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
145 STATO The Statistical Methods Ontology
146 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
147 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
148 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
149 TCMDPO Traditional Chiinese Medicine DPO
150 TFClass_human Ontology of Human Transcription Factors
151 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
152 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
153 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
154 UO Units of measurement http://purl.obolibrary.org/obo/UO_0000256
155 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
156 VHOG verteberate Homologous Organ Groups http://purl.obolibrary.org/obo/VHOG_0001198
157 VIVO-ISF VIVO-ISF
158 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
159 VSAO Vertebrate Musculoskeletal Anatomy Ontology http://purl.obolibrary.org/obo/VAO_0000004
160 VT Vertebrate trait
161 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
162 WBbt C. elegans gross anatomy http://purl.obolibrary.org/obo/WBbt_0006365
163 WBLS C. elegans development http://purl.obolibrary.org/obo/WBls_0000074
164 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
165 XAO Xenopus anatomy and development http://purl.obolibrary.org/obo/XAO_0004086
166 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
167 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
168 ZECO Zebrafish Experimental Conditions Ontology
169 ZFA Zebrafish anatomy and development http://purl.obolibrary.org/obo/ZFA_0000027
170 ZFS Zebrafish developmental stages http://purl.obolibrary.org/obo/ZFS_0000022