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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 APOLLO_SV Apollo Structured Vocabulary
8 ARO Antibiotic Resistance Ontology
9 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
10 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
11 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
12 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
13 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
14 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
15 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
16 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
17 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
18 CEPH Cephalopod Ontology
19 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
20 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
21 CHMO Chemical Methods Ontology
22 CIO Confidence Information Ontology
23 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
24 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
25 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
26 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
27 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
28 CRO Contributor Role Ontology
29 CTCAE-OAEview OAE CTCAE view
30 CTENO Ctenophore Ontology
31 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
32 d-acts Ontology of Document Acts
33 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
34 DDPHENO Dictyostelium discoideum phenotype ontology
35 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
36 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
37 DPO Drosophila Phenotype Ontology
38 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
39 DUO The Data Use Ontology
40 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
41 ECOCORE An ontology of core ecological entities
42 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
43 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
44 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
45 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
46 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
47 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
48 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
49 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
50 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
51 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
52 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
53 EUPATH EuPathDB ontology
54 ExO Exposure ontology
55 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
56 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
57 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
58 FBCV FlyBase Controlled Vocabulary
59 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
60 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
61 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
62 FLOPO Flora Phenotype Ontology
63 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
64 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
65 FOODON FOODON
66 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
67 GAZ Gazetteer
68 GENEPIO Genomic Epidemiology Ontology
69 GENO Genotype Ontology
70 GEO Geographical Entity Ontology
71 GNO Glycan Naming Ontology
72 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
73 GRO Cereal Plant Gross Anatomy
74 HANCESTRO Human Ancestry Ontology
75 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
76 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
77 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
78 HSAPDV Human Developmental Stages
79 HTN Hypertension Ontology
80 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
81 IAO-Onto-Meta IAO Ontology Metadata
82 ICDO International Classification of Disease Ontology
83 ICEO Integrative and Conjugative Element Ontology
84 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
85 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
86 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
87 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
88 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
89 KISAO Kinetic Simulation Algorithm Ontology
90 KTAO Kidney Tissue Atlas Ontology
91 LINCS-CLOview CLO LINCS view
92 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
93 MAMO Mathematical modeling ontology
94 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
95 MCO Microbial Conditions Ontology
96 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
97 MFMO Mammalian Feeding Muscle Ontology
98 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
99 MFOMD Mental Disease Ontology
100 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
101 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
102 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
103 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
104 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
105 MMUSDV Mouse Developmental Stages
106 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
107 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
108 MONDO Mondo Disease Ontology
109 MOP Molecular Process Ontology
110 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
111 MPATH Mouse pathology ontology
112 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
113 MPIO Minimum PDDI Information Ontology
114 MRO MHC Restriction Ontology
115 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
116 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
117 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
118 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
119 NCRO Non-Coding RNA Ontology
120 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
121 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
122 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
123 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
124 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
125 NOMEN NOMEN - A nomenclatural ontology for biological names
126 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
127 OARCS Ontology of Arthropod Circulatory Systems
128 OBA Ontology of Biological Attributes
129 OBCS Ontology of Biological and Clinical Statistics
130 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
131 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
132 OBIB Ontology for Biobanking
133 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
134 OboInOwl OboInOwl OBO Format metamodel
135 OCMR Ontology of Chinese Medicine for Rheumatism
136 OCVDAE Ontology of Cardiovascular Drug Adverse Events
137 ODAE Ontology of Drug Adverse Events
138 ODNAE Ontologyof Drug Neuropathy Adverse Events
139 OGG The Ontology of Genes and Genomes
140 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
141 OGG-Bru Ontology of Genes and Genomes - Brucella
142 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
143 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
144 OGG-Dr Ontology of Genes and Genomes - Zebrafish
145 OGG-Mm Ontology of Genes and Genomes - Mouse
146 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
147 OGG-Sc Ontology of Genes and Genomes - Yeast
148 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
149 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
150 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
151 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
152 OHMI Ontology of Host-Microbiome Interactions
153 OHPI Ontology of Host Pathogen Interactions
154 OLAM Ontology of Laboratory Animal Medicine
155 OLATDV Medaka Developmental Stages
156 OLOBO Ontology for Linking Biological and Medical Ontologies
157 OMIABIS Ontologized MIABIS
158 OMIT Ontology for MIRNA Target
159 OMP Ontology of Microbial Phenotypes
160 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
161 ONTONEO Obstetric and Neonatal Ontology
162 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
163 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
164 OPMI Ontology of Precision Medicine and Investigation
165 ORNASEQ Ontology of RNA Sequencing
166 OSCI Ontology for Stem Cell Investigations
167 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
168 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
169 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
170 PDRO The Prescription of Drugs Ontology
171 PDUMDV Platynereis Developmental Stages
172 PECO Plant Experimental Conditions Ontology
173 PHIPO Pathogen Host Interaction Phenotype Ontology
174 PLANA planaria-ontology
175 PLANP Planarian Phenotype Ontology
176 PNO Proper Name Ontology
177 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
178 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
179 PPO Plant Phenology Ontology
180 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
181 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
182 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
183 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
184 RNAO RNA ontology
185 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
186 ROLEO Role Ontology
187 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
188 RXNO Name Reaction Ontology
189 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
190 SBO Systems Biology Ontology
191 SDGIO Sustainable Development Goals Interface Ontology
192 SEPIO Scientific Evidence and Provenance Information Ontology
193 SIBO Social Insect Behavior Ontology
194 SIO Semanticscience Integrated Ontology
195 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
196 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
197 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
198 STATO The Statistical Methods Ontology
199 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
200 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
201 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
202 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
203 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
204 TCMDPO Traditional Chiinese Medicine DPO
205 TFClass_human Ontology of Human Transcription Factors
206 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
207 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
208 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
209 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
210 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
211 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
212 UPA Unipathway
213 UPHENO Unified phenotype ontology (uPheno)
214 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
215 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
216 VICO Vaccination Informed Consent Ontology
217 VIO Vaccine Investigation Ontology
218 VIVO-ISF VIVO-ISF
219 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
220 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
221 VT Vertebrate trait ontology
222 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
223 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
224 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
225 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
226 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
227 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
228 XPO Xenopus Phenotype Ontology
229 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
230 ZECO Zebrafish Experimental Conditions Ontology
231 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
232 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
233 ZP Zebrafish Phenotype Ontology