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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 AMPHX The Amphioxus Development and Anatomy Ontology
6 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
7 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
8 APOLLO_SV Apollo Structured Vocabulary
9 ARO Antibiotic Resistance Ontology
10 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
11 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
12 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
13 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
14 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
15 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
16 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
17 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
18 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
19 CEPH Cephalopod Ontology
20 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
21 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
22 CHIRO CHEBI Integrated Role Ontology
23 CHMO Chemical Methods Ontology
24 CIDO Coronavirus Infectious Disease Ontology
25 CIO Confidence Information Ontology
26 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
27 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
28 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
29 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
30 CLYH Clytia hemisphaerica Development and Anatomy Ontology
31 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
32 COB Core Ontology for Biology and Biomedicine
33 CRO Contributor Role Ontology
34 CTCAE-OAEview OAE CTCAE view
35 CTENO Ctenophore Ontology
36 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
37 d-acts Ontology of Document Acts
38 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
39 DDPHENO Dictyostelium discoideum phenotype ontology
40 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
41 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
42 DPO Drosophila Phenotype Ontology
43 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
44 DUO The Data Use Ontology
45 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
46 ECOCORE An ontology of core ecological entities
47 ECTO Environmental conditions, treatments and exposures ontology
48 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
49 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
50 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
51 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
52 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
53 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
54 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
55 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
56 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
57 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
58 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
59 EUPATH VEuPathDB ontology
60 ExO Exposure ontology
61 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
62 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
63 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
64 FBCV FlyBase Controlled Vocabulary
65 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
66 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
67 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
68 FLOPO Flora Phenotype Ontology
69 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
70 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
71 FOBI FOBI
72 FOODON FOODON
73 FOVT FuTRES Ontology of Vertebrate Traits
74 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
75 GAZ Gazetteer
76 GENEPIO Genomic Epidemiology Ontology
77 GENO Genotype Ontology
78 GEO Geographical Entity Ontology
79 GNO Glycan Naming and Subsumption Ontology (GNOme)
80 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
81 GRO Cereal Plant Gross Anatomy
82 HANCESTRO Human Ancestry Ontology
83 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
84 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
85 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
86 HSAPDV Human Developmental Stages
87 HTN Hypertension Ontology
88 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
89 IAO-Onto-Meta IAO Ontology Metadata
90 ICDO International Classification of Disease Ontology
91 ICEO Integrative and Conjugative Element Ontology
92 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
93 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
94 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
95 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
96 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
97 KISAO Kinetic Simulation Algorithm Ontology
98 KTAO Kidney Tissue Atlas Ontology
99 LABO clinical LABoratory Ontology
100 LINCS-CLOview CLO LINCS view
101 LTHIDO LTHIDO
102 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
103 MAMO Mathematical modeling ontology
104 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
105 MAXO Medical Action Ontology
106 MCO Microbial Conditions Ontology
107 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
108 MFMO Mammalian Feeding Muscle Ontology
109 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
110 MFOMD Mental Disease Ontology
111 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
112 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
113 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
114 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
115 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
116 MMUSDV Mouse Developmental Stages
117 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
118 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
119 MONDO Mondo Disease Ontology
120 MOP Molecular Process Ontology
121 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
122 MPATH Mouse pathology ontology
123 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
124 MPIO Minimum PDDI Information Ontology
125 MRO MHC Restriction Ontology
126 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
127 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
128 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
129 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
130 NCRO Non-Coding RNA Ontology
131 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
132 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
133 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
134 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
135 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
136 NOMEN NOMEN - A nomenclatural ontology for biological names
137 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
138 OARCS Ontology of Arthropod Circulatory Systems
139 OBA Ontology of Biological Attributes
140 OBCS Ontology of Biological and Clinical Statistics
141 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
142 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
143 OBIB Ontology for Biobanking
144 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
145 OboInOwl OboInOwl OBO Format metamodel
146 OCE Ontology of Chemical Elements
147 OCMR Ontology of Chinese Medicine for Rheumatism
148 OCVDAE Ontology of Cardiovascular Drug Adverse Events
149 ODAE Ontology of Drug Adverse Events
150 ODNAE Ontologyof Drug Neuropathy Adverse Events
151 OGG The Ontology of Genes and Genomes
152 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
153 OGG-Bru Ontology of Genes and Genomes - Brucella
154 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
155 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
156 OGG-Dr Ontology of Genes and Genomes - Zebrafish
157 OGG-Mm Ontology of Genes and Genomes - Mouse
158 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
159 OGG-Sc Ontology of Genes and Genomes - Yeast
160 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
161 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
162 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
163 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
164 OHMI Ontology of Host-Microbiome Interactions
165 OHPI Ontology of Host Pathogen Interactions
166 OLAM Ontology of Laboratory Animal Medicine
167 OLATDV Medaka Developmental Stages
168 OLOBO Ontology for Linking Biological and Medical Ontologies
169 OMIABIS Ontologized MIABIS
170 OMIT Ontology for MIRNA Target
171 OMO OBO Metadata Ontology
172 OMP Ontology of Microbial Phenotypes
173 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
174 ONTONEO Obstetric and Neonatal Ontology
175 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
176 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
177 OPMI Ontology of Precision Medicine and Investigation
178 ORNASEQ Ontology of RNA Sequencing
179 OSCI Ontology for Stem Cell Investigations
180 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
181 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
182 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
183 PDRO The Prescription of Drugs Ontology
184 PDUMDV Platynereis Developmental Stages
185 PECO Plant Experimental Conditions Ontology
186 PHIPO Pathogen Host Interaction Phenotype Ontology
187 PLANA planaria-ontology
188 PLANP Planarian Phenotype Ontology
189 PNO Proper Name Ontology
190 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
191 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
192 PPO Plant Phenology Ontology
193 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
194 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
195 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
196 Reactome Reactome Ontology
197 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
198 RNAO RNA ontology
199 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
200 ROLEO Role Ontology
201 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
202 RXNO Name Reaction Ontology
203 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
204 SBO Systems Biology Ontology
205 SDGIO Sustainable Development Goals Interface Ontology
206 SEPIO Scientific Evidence and Provenance Information Ontology
207 SIBO Social Insect Behavior Ontology
208 SIO Semanticscience Integrated Ontology
209 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
210 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
211 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
212 STATO The Statistical Methods Ontology
213 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
214 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
215 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
216 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
217 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
218 TCMDPO Traditional Chiinese Medicine DPO
219 TFClass_human Ontology of Human Transcription Factors
220 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
221 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
222 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
223 TSO Transportation System Ontology
224 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
225 TXPO Toxic Process Ontology
226 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
227 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
228 UPA Unipathway
229 UPHENO Unified phenotype ontology (uPheno)
230 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
231 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
232 VICO Vaccination Informed Consent Ontology
233 VIO Vaccine Investigation Ontology
234 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
235 VIVO-ISF VIVO-ISF
236 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
237 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
238 VT Vertebrate trait ontology
239 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
240 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
241 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
242 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
243 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
244 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
245 XPO Xenopus Phenotype Ontology
246 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
247 ZECO Zebrafish Experimental Conditions Ontology
248 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
249 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
250 ZP Zebrafish Phenotype Ontology