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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 AMPHX The Amphioxus Development and Anatomy Ontology
6 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
7 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
8 APOLLO_SV Apollo Structured Vocabulary
9 ARO Antibiotic Resistance Ontology
10 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
11 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
12 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
13 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
14 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
15 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
16 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
17 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
18 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
19 CEPH Cephalopod Ontology
20 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
21 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
22 CHIRO CHEBI Integrated Role Ontology
23 CHMO Chemical Methods Ontology
24 CIDO Coronavirus Infectious Disease Ontology
25 CIO Confidence Information Ontology
26 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
27 CLAO Collembola Anatomy Ontology
28 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
29 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
30 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
31 CLYH Clytia hemisphaerica Development and Anatomy Ontology
32 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
33 COB Core Ontology for Biology and Biomedicine
34 CRO Contributor Role Ontology
35 CTCAE-OAEview OAE CTCAE view
36 CTENO Ctenophore Ontology
37 CTO CTO: Core Ontology of Clinical Trials
38 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
39 d-acts Ontology of Document Acts
40 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
41 DDPHENO Dictyostelium discoideum phenotype ontology
42 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
43 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
44 DPO Drosophila Phenotype Ontology
45 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
46 DUO Data Use Ontology
47 ECAO The Echinoderm Anatomy and Development Ontology
48 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
49 ECOCORE An ontology of core ecological entities
50 ECTO Environmental conditions, treatments and exposures ontology
51 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
52 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
53 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
54 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
55 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
56 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
57 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
58 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
59 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
60 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
61 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
62 EUPATH VEuPathDB ontology
63 ExO Exposure ontology
64 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
65 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
66 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
67 FBCV FlyBase Controlled Vocabulary
68 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
69 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
70 FIDEO Food Interactions with Drugs Evidence Ontology
71 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
72 FLOPO Flora Phenotype Ontology
73 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
74 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
75 FOBI FOBI
76 FOODON FOODON
77 FOVT FuTRES Ontology of Vertebrate Traits
78 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
79 GAZ Gazetteer
80 GECKO Genomics Cohorts Knowledge Ontology
81 GENEPIO Genomic Epidemiology Ontology
82 GENO Genotype Ontology
83 GEO Geographical Entity Ontology
84 GNO Glycan Naming and Subsumption Ontology (GNOme)
85 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
86 GRO Cereal Plant Gross Anatomy
87 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
88 HANCESTRO Human Ancestry Ontology
89 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
90 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
91 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
92 HSAPDV Human Developmental Stages
93 HTN Hypertension Ontology
94 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
95 IAO-Onto-Meta IAO Ontology Metadata
96 ICDO International Classification of Disease Ontology
97 ICEO Integrative and Conjugative Element Ontology
98 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
99 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
100 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
101 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
102 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
103 KISAO Kinetic Simulation Algorithm Ontology
104 KTAO Kidney Tissue Atlas Ontology
105 LABO clinical LABoratory Ontology
106 LINCS-CLOview CLO LINCS view
107 LTHIDO LTHIDO
108 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
109 MAMO Mathematical modeling ontology
110 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
111 MAXO Medical Action Ontology
112 MCO Microbial Conditions Ontology
113 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
114 MFMO Mammalian Feeding Muscle Ontology
115 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
116 MFOMD Mental Disease Ontology
117 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
118 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
119 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
120 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
121 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
122 MMUSDV Mouse Developmental Stages
123 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
124 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
125 MONDO Mondo Disease Ontology
126 MOP Molecular Process Ontology
127 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
128 MPATH Mouse pathology ontology
129 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
130 MPIO Minimum PDDI Information Ontology
131 MRO MHC Restriction Ontology
132 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
133 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
134 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
135 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
136 NCRO Non-Coding RNA Ontology
137 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
138 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
139 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
140 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
141 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
142 NOMEN NOMEN - A nomenclatural ontology for biological names
143 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
144 OARCS Ontology of Arthropod Circulatory Systems
145 OBA Ontology of Biological Attributes
146 OBCS Ontology of Biological and Clinical Statistics
147 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
148 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
149 OBIB Ontology for Biobanking
150 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
151 OboInOwl OboInOwl OBO Format metamodel
152 OCE Ontology of Chemical Elements
153 OCMR Ontology of Chinese Medicine for Rheumatism
154 OCVDAE Ontology of Cardiovascular Drug Adverse Events
155 ODAE Ontology of Drug Adverse Events
156 ODNAE Ontologyof Drug Neuropathy Adverse Events
157 OGG The Ontology of Genes and Genomes
158 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
159 OGG-Bru Ontology of Genes and Genomes - Brucella
160 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
161 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
162 OGG-Dr Ontology of Genes and Genomes - Zebrafish
163 OGG-Mm Ontology of Genes and Genomes - Mouse
164 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
165 OGG-Sc Ontology of Genes and Genomes - Yeast
166 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
167 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
168 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
169 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
170 OHMI Ontology of Host-Microbiome Interactions
171 OHPI Ontology of Host Pathogen Interactions
172 OLAM Ontology of Laboratory Animal Medicine
173 OLATDV Medaka Developmental Stages
174 OLOBO Ontology for Linking Biological and Medical Ontologies
175 OMIABIS Ontologized MIABIS
176 OMIT Ontology for MIRNA Target
177 OMO OBO Metadata Ontology
178 OMP Ontology of Microbial Phenotypes
179 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
180 ONE Ontology for Nutritional Epidemiology
181 ONS ONS
182 ONTONEO Obstetric and Neonatal Ontology
183 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
184 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
185 OPMI Ontology of Precision Medicine and Investigation
186 ORNASEQ Ontology of RNA Sequencing
187 OSCI Ontology for Stem Cell Investigations
188 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
189 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
190 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
191 PDRO The Prescription of Drugs Ontology
192 PDUMDV Platynereis Developmental Stages
193 PECO Plant Experimental Conditions Ontology
194 PHIPO Pathogen Host Interaction Phenotype Ontology
195 PLANA planaria-ontology
196 PLANP Planarian Phenotype Ontology
197 PNO Proper Name Ontology
198 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
199 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
200 PPO Plant Phenology Ontology
201 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
202 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
203 PSO Plant Stress Ontology
204 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
205 Reactome Reactome Ontology
206 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
207 RNAO RNA ontology
208 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
209 ROLEO Role Ontology
210 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
211 RXNO Name Reaction Ontology
212 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
213 SBO Systems Biology Ontology
214 SDGIO Sustainable Development Goals Interface Ontology
215 SEPIO Scientific Evidence and Provenance Information Ontology
216 SIBO Social Insect Behavior Ontology
217 SIO Semanticscience Integrated Ontology
218 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
219 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
220 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
221 STATO The Statistical Methods Ontology
222 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
223 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
224 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
225 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
226 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
227 TCMDPO Traditional Chiinese Medicine DPO
228 TFClass_human Ontology of Human Transcription Factors
229 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
230 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
231 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
232 TSO Transportation System Ontology
233 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
234 TXPO Toxic Process Ontology
235 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
236 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
237 UPA Unipathway
238 UPHENO Unified phenotype ontology (uPheno)
239 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
240 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
241 VICO Vaccination Informed Consent Ontology
242 VIO Vaccine Investigation Ontology
243 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
244 VIVO-ISF VIVO-ISF
245 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
246 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
247 VT Vertebrate trait ontology
248 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
249 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
250 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
251 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
252 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
253 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
254 XPO Xenopus Phenotype Ontology
255 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
256 ZECO Zebrafish Experimental Conditions Ontology
257 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
258 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
259 ZP Zebrafish Phenotype Ontology