Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
6 AMPHX The Amphioxus Development and Anatomy Ontology
7 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
8 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
9 APOLLO_SV Apollo Structured Vocabulary
10 ARO Antibiotic Resistance Ontology
11 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
12 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
13 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
14 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
15 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
16 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
17 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
18 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
19 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
20 CDNO Compositional Dietary Nutrition Ontology
21 CEPH Cephalopod Ontology
22 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
23 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
24 CHIRO CHEBI Integrated Role Ontology
25 CHMO Chemical Methods Ontology
26 CIDO Coronavirus Infectious Disease Ontology
27 CIO Confidence Information Ontology
28 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
29 CLAO Collembola Anatomy Ontology
30 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
31 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
32 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
33 CLYH Clytia hemisphaerica Development and Anatomy Ontology
34 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
35 COB Core Ontology for Biology and Biomedicine
36 CRO Contributor Role Ontology
38 CTENO Ctenophore Ontology
39 CTO CTO: Core Ontology of Clinical Trials
40 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
41 d-acts Ontology of Document Acts
42 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
43 DDPHENO Dictyostelium discoideum phenotype ontology
44 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
45 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
46 DPO Drosophila Phenotype Ontology
47 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
48 DUO Data Use Ontology
49 ECAO The Echinoderm Anatomy and Development Ontology
50 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
51 ECOCORE An ontology of core ecological entities
52 ECTO Environmental conditions, treatments and exposures ontology
53 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
54 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
55 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
56 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
57 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
58 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
59 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
60 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
61 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
62 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
63 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
64 EUPATH VEuPathDB ontology
65 ExO Exposure ontology
66 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
67 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
68 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
69 FBCV FlyBase Controlled Vocabulary
70 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
71 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
72 FIDEO Food Interactions with Drugs Evidence Ontology
73 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
74 FLOPO Flora Phenotype Ontology
75 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
76 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
79 FOVT FuTRES Ontology of Vertebrate Traits
80 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
81 GAZ Gazetteer
82 GECKO Genomics Cohorts Knowledge Ontology
83 GENEPIO Genomic Epidemiology Ontology
84 GENO Genotype Ontology
85 GEO Geographical Entity Ontology
86 GNO Glycan Naming and Subsumption Ontology (GNOme)
87 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
88 GRO Cereal Plant Gross Anatomy
89 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
90 HANCESTRO Human Ancestry Ontology
91 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
92 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
93 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
94 HSAPDV Human Developmental Stages
95 HSO Health Surveillance Ontology
96 HTN Hypertension Ontology
97 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
98 IAO-Onto-Meta IAO Ontology Metadata
99 ICDO International Classification of Disease Ontology
100 ICEO Integrative and Conjugative Element Ontology
101 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
102 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
103 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
104 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
105 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
106 KISAO Kinetic Simulation Algorithm Ontology
107 KTAO Kidney Tissue Atlas Ontology
108 LABO clinical LABoratory Ontology
109 LINCS-CLOview CLO LINCS view
111 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
112 MAMO Mathematical modeling ontology
113 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
114 MAXO Medical Action Ontology
115 MCO Microbial Conditions Ontology
116 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
117 MFMO Mammalian Feeding Muscle Ontology
118 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
119 MFOMD Mental Disease Ontology
120 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
121 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
122 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
123 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
124 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
125 MMUSDV Mouse Developmental Stages
126 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
127 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
128 MONDO Mondo Disease Ontology
129 MOP Molecular Process Ontology
130 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
131 MPATH Mouse pathology ontology
132 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
133 MPIO Minimum PDDI Information Ontology
134 MRO MHC Restriction Ontology
135 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
136 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
137 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
138 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
139 NCRO Non-Coding RNA Ontology
140 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
141 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
142 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
143 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
144 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
145 NOMEN NOMEN - A nomenclatural ontology for biological names
146 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
147 OARCS Ontology of Arthropod Circulatory Systems
148 OBA Ontology of Biological Attributes
149 OBCS Ontology of Biological and Clinical Statistics
150 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
152 OBIB Ontology for Biobanking
153 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
154 OboInOwl OboInOwl OBO Format metamodel
155 OCE Ontology of Chemical Elements
156 OCMR Ontology of Chinese Medicine for Rheumatism
157 OCVDAE Ontology of Cardiovascular Drug Adverse Events
158 ODAE Ontology of Drug Adverse Events
159 ODNAE Ontologyof Drug Neuropathy Adverse Events
160 OGG The Ontology of Genes and Genomes
161 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
162 OGG-Bru Ontology of Genes and Genomes - Brucella
163 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
164 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
165 OGG-Dr Ontology of Genes and Genomes - Zebrafish
166 OGG-Mm Ontology of Genes and Genomes - Mouse
167 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
168 OGG-Sc Ontology of Genes and Genomes - Yeast
169 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
170 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
171 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
172 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
173 OHMI Ontology of Host-Microbiome Interactions
174 OHPI Ontology of Host Pathogen Interactions
175 OLAM Ontology of Laboratory Animal Medicine
176 OLATDV Medaka Developmental Stages
177 OLOBO Ontology for Linking Biological and Medical Ontologies
178 OMIABIS Ontologized MIABIS
179 OMIT Ontology for MIRNA Target
180 OMO OBO Metadata Ontology
181 OMP Ontology of Microbial Phenotypes
182 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
183 ONE Ontology for Nutritional Epidemiology
184 ONS Ontology for Nutritional Studies
185 ONTONEO Obstetric and Neonatal Ontology
186 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
187 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
188 OPMI Ontology of Precision Medicine and Investigation
189 ORNASEQ Ontology of RNA Sequencing
190 OSCI Ontology for Stem Cell Investigations
191 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
192 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
193 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
194 PDRO The Prescription of Drugs Ontology
195 PDUMDV Platynereis Developmental Stages
196 PECO Plant Experimental Conditions Ontology
197 PHIPO Pathogen Host Interaction Phenotype Ontology
198 PLANA planaria-ontology
199 PLANP Planarian Phenotype Ontology
200 PNO Proper Name Ontology
201 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
202 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
203 PPO Plant Phenology Ontology
204 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
205 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
206 PSDO Performance Summary Display Ontology
207 PSO Plant Stress Ontology
208 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
209 RBO Radiation Biology Ontology
210 Reactome Reactome Ontology
211 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
212 RNAO RNA ontology
213 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
214 ROLEO Role Ontology
215 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
216 RXNO Name Reaction Ontology
217 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
218 SBO Systems Biology Ontology
219 SCDO Sickle Cell Disease Ontology
220 SDGIO Sustainable Development Goals Interface Ontology
221 SEPIO Scientific Evidence and Provenance Information Ontology
222 SIBO Social Insect Behavior Ontology
223 SIO Semanticscience Integrated Ontology
224 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
225 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
226 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
227 STATO The Statistical Methods Ontology
228 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
229 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
230 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
231 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
232 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
233 TCMDPO Traditional Chiinese Medicine DPO
234 TFClass_human Ontology of Human Transcription Factors
235 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
236 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
237 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
238 TSO Transportation System Ontology
239 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
240 TXPO Toxic Process Ontology
241 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
242 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
243 UPA Unipathway
244 UPHENO Unified phenotype ontology (uPheno)
245 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
246 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
247 VICO Vaccination Informed Consent Ontology
248 VIO Vaccine Investigation Ontology
249 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
251 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
252 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
253 VT Vertebrate trait ontology
254 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
255 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
256 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
257 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
258 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
259 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
260 XPO Xenopus Phenotype Ontology
261 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
262 ZECO Zebrafish Experimental Conditions Ontology
263 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
264 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
265 ZP Zebrafish Phenotype Ontology