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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 APOLLO_SV Apollo Structured Vocabulary
8 ARO Antibiotic Resistance Ontology
9 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
10 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
11 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
12 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
13 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
14 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
15 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
16 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
17 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
18 CEPH Cephalopod Ontology
19 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
20 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
21 CHIRO CHEBI Integrated Role Ontology
22 CHMO Chemical Methods Ontology
23 CIO Confidence Information Ontology
24 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
25 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
26 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
27 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
28 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
29 CRO Contributor Role Ontology
30 CTCAE-OAEview OAE CTCAE view
31 CTENO Ctenophore Ontology
32 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
33 d-acts Ontology of Document Acts
34 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
35 DDPHENO Dictyostelium discoideum phenotype ontology
36 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
37 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
38 DPO Drosophila Phenotype Ontology
39 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
40 DUO The Data Use Ontology
41 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
42 ECOCORE An ontology of core ecological entities
43 ECTO Environmental conditions, treatments and exposures ontology
44 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
45 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
46 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
47 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
48 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
49 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
50 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
51 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
52 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
53 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
54 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
55 EUPATH VEuPathDB ontology
56 ExO Exposure ontology
57 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
58 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
59 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
60 FBCV FlyBase Controlled Vocabulary
61 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
62 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
63 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
64 FLOPO Flora Phenotype Ontology
65 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
66 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
67 FOODON FOODON
68 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
69 GAZ Gazetteer
70 GENEPIO Genomic Epidemiology Ontology
71 GENO Genotype Ontology
72 GEO Geographical Entity Ontology
73 GNO Glycan Naming Ontology
74 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
75 GRO Cereal Plant Gross Anatomy
76 HANCESTRO Human Ancestry Ontology
77 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
78 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
79 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
80 HSAPDV Human Developmental Stages
81 HTN Hypertension Ontology
82 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
83 IAO-Onto-Meta IAO Ontology Metadata
84 ICDO International Classification of Disease Ontology
85 ICEO Integrative and Conjugative Element Ontology
86 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
87 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
88 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
89 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
90 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
91 KISAO Kinetic Simulation Algorithm Ontology
92 KTAO Kidney Tissue Atlas Ontology
93 LABO clinical LABoratory Ontology
94 LINCS-CLOview CLO LINCS view
95 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
96 MAMO Mathematical modeling ontology
97 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
98 MCO Microbial Conditions Ontology
99 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
100 MFMO Mammalian Feeding Muscle Ontology
101 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
102 MFOMD Mental Disease Ontology
103 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
104 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
105 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
106 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
107 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
108 MMUSDV Mouse Developmental Stages
109 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
110 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
111 MONDO Mondo Disease Ontology
112 MOP Molecular Process Ontology
113 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
114 MPATH Mouse pathology ontology
115 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
116 MPIO Minimum PDDI Information Ontology
117 MRO MHC Restriction Ontology
118 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
119 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
120 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
121 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
122 NCRO Non-Coding RNA Ontology
123 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
124 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
125 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
126 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
127 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
128 NOMEN NOMEN - A nomenclatural ontology for biological names
129 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
130 OARCS Ontology of Arthropod Circulatory Systems
131 OBA Ontology of Biological Attributes
132 OBCS Ontology of Biological and Clinical Statistics
133 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
134 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
135 OBIB Ontology for Biobanking
136 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
137 OboInOwl OboInOwl OBO Format metamodel
138 OCMR Ontology of Chinese Medicine for Rheumatism
139 OCVDAE Ontology of Cardiovascular Drug Adverse Events
140 ODAE Ontology of Drug Adverse Events
141 ODNAE Ontologyof Drug Neuropathy Adverse Events
142 OGG The Ontology of Genes and Genomes
143 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
144 OGG-Bru Ontology of Genes and Genomes - Brucella
145 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
146 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
147 OGG-Dr Ontology of Genes and Genomes - Zebrafish
148 OGG-Mm Ontology of Genes and Genomes - Mouse
149 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
150 OGG-Sc Ontology of Genes and Genomes - Yeast
151 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
152 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
153 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
154 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
155 OHMI Ontology of Host-Microbiome Interactions
156 OHPI Ontology of Host Pathogen Interactions
157 OLAM Ontology of Laboratory Animal Medicine
158 OLATDV Medaka Developmental Stages
159 OLOBO Ontology for Linking Biological and Medical Ontologies
160 OMIABIS Ontologized MIABIS
161 OMIT Ontology for MIRNA Target
162 OMP Ontology of Microbial Phenotypes
163 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
164 ONTONEO Obstetric and Neonatal Ontology
165 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
166 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
167 OPMI Ontology of Precision Medicine and Investigation
168 ORNASEQ Ontology of RNA Sequencing
169 OSCI Ontology for Stem Cell Investigations
170 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
171 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
172 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
173 PDRO The Prescription of Drugs Ontology
174 PDUMDV Platynereis Developmental Stages
175 PECO Plant Experimental Conditions Ontology
176 PHIPO Pathogen Host Interaction Phenotype Ontology
177 PLANA planaria-ontology
178 PLANP Planarian Phenotype Ontology
179 PNO Proper Name Ontology
180 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
181 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
182 PPO Plant Phenology Ontology
183 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
184 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
185 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
186 Reactome Reactome Ontology
187 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
188 RNAO RNA ontology
189 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
190 ROLEO Role Ontology
191 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
192 RXNO Name Reaction Ontology
193 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
194 SBO Systems Biology Ontology
195 SDGIO Sustainable Development Goals Interface Ontology
196 SEPIO Scientific Evidence and Provenance Information Ontology
197 SIBO Social Insect Behavior Ontology
198 SIO Semanticscience Integrated Ontology
199 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
200 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
201 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
202 STATO The Statistical Methods Ontology
203 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
204 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
205 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
206 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
207 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
208 TCMDPO Traditional Chiinese Medicine DPO
209 TFClass_human Ontology of Human Transcription Factors
210 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
211 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
212 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
213 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
214 TXPO Toxic Process Ontology
215 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
216 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
217 UPA Unipathway
218 UPHENO Unified phenotype ontology (uPheno)
219 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
220 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
221 VICO Vaccination Informed Consent Ontology
222 VIO Vaccine Investigation Ontology
223 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
224 VIVO-ISF VIVO-ISF
225 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
226 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
227 VT Vertebrate trait ontology
228 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
229 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
230 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
231 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
232 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
233 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
234 XPO Xenopus Phenotype Ontology
235 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
236 ZECO Zebrafish Experimental Conditions Ontology
237 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
238 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
239 ZP Zebrafish Phenotype Ontology