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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 AMPHX The Amphioxus Development and Anatomy Ontology
6 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
7 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
8 APOLLO_SV Apollo Structured Vocabulary
9 ARO Antibiotic Resistance Ontology
10 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
11 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
12 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
13 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
14 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
15 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
16 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
17 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
18 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
19 CEPH Cephalopod Ontology
20 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
21 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
22 CHIRO CHEBI Integrated Role Ontology
23 CHMO Chemical Methods Ontology
24 CIDO Coronavirus Infectious Disease Ontology
25 CIO Confidence Information Ontology
26 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
27 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
28 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
29 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
30 CLYH Clytia hemisphaerica Development and Anatomy Ontology
31 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
32 COB Core Ontology for Biology and Biomedicine
33 CRO Contributor Role Ontology
34 CTCAE-OAEview OAE CTCAE view
35 CTENO Ctenophore Ontology
36 CTO CTO: Core Ontology of Clinical Trials
37 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
38 d-acts Ontology of Document Acts
39 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
40 DDPHENO Dictyostelium discoideum phenotype ontology
41 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
42 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
43 DPO Drosophila Phenotype Ontology
44 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
45 DUO Data Use Ontology
46 ECAO The Echinoderm Anatomy and Development Ontology
47 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
48 ECOCORE An ontology of core ecological entities
49 ECTO Environmental conditions, treatments and exposures ontology
50 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
51 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
52 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
53 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
54 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
55 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
56 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
57 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
58 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
59 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
60 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
61 EUPATH VEuPathDB ontology
62 ExO Exposure ontology
63 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
64 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
65 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
66 FBCV FlyBase Controlled Vocabulary
67 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
68 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
69 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
70 FLOPO Flora Phenotype Ontology
71 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
72 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
73 FOBI FOBI
74 FOODON FOODON
75 FOVT FuTRES Ontology of Vertebrate Traits
76 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
77 GAZ Gazetteer
78 GECKO Genomics Cohorts Knowledge Ontology
79 GENEPIO Genomic Epidemiology Ontology
80 GENO Genotype Ontology
81 GEO Geographical Entity Ontology
82 GNO Glycan Naming and Subsumption Ontology (GNOme)
83 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
84 GRO Cereal Plant Gross Anatomy
85 HANCESTRO Human Ancestry Ontology
86 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
87 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
88 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
89 HSAPDV Human Developmental Stages
90 HTN Hypertension Ontology
91 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
92 IAO-Onto-Meta IAO Ontology Metadata
93 ICDO International Classification of Disease Ontology
94 ICEO Integrative and Conjugative Element Ontology
95 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
96 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
97 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
98 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
99 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
100 KISAO Kinetic Simulation Algorithm Ontology
101 KTAO Kidney Tissue Atlas Ontology
102 LABO clinical LABoratory Ontology
103 LINCS-CLOview CLO LINCS view
104 LTHIDO LTHIDO
105 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
106 MAMO Mathematical modeling ontology
107 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
108 MAXO Medical Action Ontology
109 MCO Microbial Conditions Ontology
110 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
111 MFMO Mammalian Feeding Muscle Ontology
112 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
113 MFOMD Mental Disease Ontology
114 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
115 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
116 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
117 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
118 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
119 MMUSDV Mouse Developmental Stages
120 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
121 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
122 MONDO Mondo Disease Ontology
123 MOP Molecular Process Ontology
124 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
125 MPATH Mouse pathology ontology
126 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
127 MPIO Minimum PDDI Information Ontology
128 MRO MHC Restriction Ontology
129 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
130 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
131 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
132 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
133 NCRO Non-Coding RNA Ontology
134 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
135 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
136 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
137 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
138 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
139 NOMEN NOMEN - A nomenclatural ontology for biological names
140 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
141 OARCS Ontology of Arthropod Circulatory Systems
142 OBA Ontology of Biological Attributes
143 OBCS Ontology of Biological and Clinical Statistics
144 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
145 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
146 OBIB Ontology for Biobanking
147 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
148 OboInOwl OboInOwl OBO Format metamodel
149 OCE Ontology of Chemical Elements
150 OCMR Ontology of Chinese Medicine for Rheumatism
151 OCVDAE Ontology of Cardiovascular Drug Adverse Events
152 ODAE Ontology of Drug Adverse Events
153 ODNAE Ontologyof Drug Neuropathy Adverse Events
154 OGG The Ontology of Genes and Genomes
155 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
156 OGG-Bru Ontology of Genes and Genomes - Brucella
157 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
158 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
159 OGG-Dr Ontology of Genes and Genomes - Zebrafish
160 OGG-Mm Ontology of Genes and Genomes - Mouse
161 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
162 OGG-Sc Ontology of Genes and Genomes - Yeast
163 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
164 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
165 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
166 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
167 OHMI Ontology of Host-Microbiome Interactions
168 OHPI Ontology of Host Pathogen Interactions
169 OLAM Ontology of Laboratory Animal Medicine
170 OLATDV Medaka Developmental Stages
171 OLOBO Ontology for Linking Biological and Medical Ontologies
172 OMIABIS Ontologized MIABIS
173 OMIT Ontology for MIRNA Target
174 OMO OBO Metadata Ontology
175 OMP Ontology of Microbial Phenotypes
176 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
177 ONS ONS
178 ONTONEO Obstetric and Neonatal Ontology
179 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
180 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
181 OPMI Ontology of Precision Medicine and Investigation
182 ORNASEQ Ontology of RNA Sequencing
183 OSCI Ontology for Stem Cell Investigations
184 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
185 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
186 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
187 PDRO The Prescription of Drugs Ontology
188 PDUMDV Platynereis Developmental Stages
189 PECO Plant Experimental Conditions Ontology
190 PHIPO Pathogen Host Interaction Phenotype Ontology
191 PLANA planaria-ontology
192 PLANP Planarian Phenotype Ontology
193 PNO Proper Name Ontology
194 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
195 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
196 PPO Plant Phenology Ontology
197 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
198 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
199 PSO Plant Stress Ontology
200 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
201 Reactome Reactome Ontology
202 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
203 RNAO RNA ontology
204 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
205 ROLEO Role Ontology
206 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
207 RXNO Name Reaction Ontology
208 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
209 SBO Systems Biology Ontology
210 SDGIO Sustainable Development Goals Interface Ontology
211 SEPIO Scientific Evidence and Provenance Information Ontology
212 SIBO Social Insect Behavior Ontology
213 SIO Semanticscience Integrated Ontology
214 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
215 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
216 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
217 STATO The Statistical Methods Ontology
218 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
219 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
220 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
221 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
222 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
223 TCMDPO Traditional Chiinese Medicine DPO
224 TFClass_human Ontology of Human Transcription Factors
225 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
226 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
227 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
228 TSO Transportation System Ontology
229 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
230 TXPO Toxic Process Ontology
231 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
232 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
233 UPA Unipathway
234 UPHENO Unified phenotype ontology (uPheno)
235 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
236 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
237 VICO Vaccination Informed Consent Ontology
238 VIO Vaccine Investigation Ontology
239 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
240 VIVO-ISF VIVO-ISF
241 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
242 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
243 VT Vertebrate trait ontology
244 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
245 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
246 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
247 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
248 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
249 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
250 XPO Xenopus Phenotype Ontology
251 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
252 ZECO Zebrafish Experimental Conditions Ontology
253 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
254 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
255 ZP Zebrafish Phenotype Ontology