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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
3 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
4 AGRO Agronomy Ontology
5 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
6 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
7 ARO Antibiotic Resistance Ontology
8 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
9 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
10 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
11 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
12 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
13 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
14 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
15 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
16 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
17 CEPH Cephalopod Ontology
18 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
19 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
20 CHMO Chemical Methods Ontology
21 CIO Confidence Information Ontology
22 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
23 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
24 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
25 CTCAE-OAEview OAE CTCAE view
26 CTENO Ctenophore Ontology
27 d-acts Ontology of Document Acts
28 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
29 DDPHENO Dictyostelium discoideum phenotype
30 DIDEO Drug Interaction and Evidence Ontology
31 DINTO The Drug-Drug Interactions Ontology
32 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
33 DPO Drosophila Phenotype Ontology
34 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
35 DUO The Data Use Ontology
36 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
37 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
38 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
39 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
40 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
41 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
42 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
43 EMAPA Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAPA_16236
44 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
45 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
46 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
47 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
48 EUPATH EuPath ontology
49 ExO Exposure ontology
50 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
51 FBBI Biological imaging methods http://purl.obolibrary.org/obo/FBbi_00000016
52 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
53 FBCV FlyBase Controlled Vocabulary
54 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
55 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
56 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
57 FLOPO Flora Phenotype Ontology
58 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
59 FMA Foundational Model of Anatomy (subset) http://purl.obolibrary.org/obo/FMA_27742
60 FOODON FOODON
61 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
62 GAZ Gazetteer
63 GENEPIO Genomic Epidemiology Ontology
64 GENO Genotype Ontology
65 GEO Geographical Entity Ontology
66 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
67 GRO Cereal Plant Gross Anatomy
68 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
69 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
70 HP human phenotype ontology http://purl.obolibrary.org/obo/HP_0008736
71 HSAPDV Human Developmental Stages
72 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
73 IAO-Onto-Meta IAO Ontology Metadata
74 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
75 IDO Infectious disease http://purl.obolibrary.org/obo/IDO_0000558
76 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
77 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
78 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
79 KISAO Kinetic Simulation Algorithm Ontology
80 LINCS-CLOview CLO LINCS view
81 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
82 MAMO Mathematical modeling ontology
83 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
84 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
85 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
86 MFOMD MFO Mental Disease Ontology
87 MI Molecular interactions http://purl.obolibrary.org/obo/MI_0659
88 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
89 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
90 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
91 MMUSDV Mouse Developmental Stages
92 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
93 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
94 MONDO Monarch Disease Ontology
95 MOP Molecular Process Ontology
96 MP Mammalian phenotype http://purl.obolibrary.org/obo/MP_0000202
97 MPATH Mouse pathology
98 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
99 MPIO Minimum PDDI Information Ontology
100 MRO MHC Restriction Ontology
101 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
102 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
103 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
104 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
105 NCRO Non-Coding RNA Ontology
106 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
107 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
108 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
109 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
110 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
111 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
112 OARCS Ontology of Arthropod Circulatory Systems
113 OBA Ontology of Biological Attributes
114 OBCS Ontology of Biological and Clinical Statistics
115 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
116 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
117 OBIB Ontology for Biobanking
118 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
119 OboInOwl OboInOwl OBO Format metamodel
120 OCMR Ontology of Chinese Medicine for Rheumatism
121 OCVDAE Ontology of Cardiovascular Drug Adverse Events
122 ODNAE Ontologyof Drug Neuropathy Adverse Events
123 OGG The Ontology of Genes and Genomes
124 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
125 OGG-Bru Ontology of Genes and Genomes - Brucella
126 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
127 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
128 OGG-Dr Ontology of Genes and Genomes - Zebrafish
129 OGG-Mm Ontology of Genes and Genomes - Mouse
130 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
131 OGG-Sc Ontology of Genes and Genomes - Yeast
132 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
133 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
134 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
135 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
136 OHMI Ontology of Host-Microbiome Interactions
137 OHPI Ontology of Host-Pathogen Interactions
138 OLATDV Medaka Developmental Stages
139 OLOBO Ontology for Linking Biological and Medical Ontologies
140 OMIABIS Ontologized MIABIS
141 OMIT Ontology for MIRNA Target
142 OMP Ontology of Microbial Phenotypes
143 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
144 ONTONEO Obstetric and Neonatal Ontology
145 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
146 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
147 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
148 PATO Phenotypic quality http://purl.obolibrary.org/obo/PATO_0000054
149 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
150 PDRO The Prescription of Drugs Ontology
151 PDUMDV Platynereis Developmental Stages
152 PECO Plant Experimental Conditions Ontology
153 PLANA planaria-ontology
154 PNO Proper Name Ontology
155 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
156 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
157 PPO Plant Phenology Ontology
158 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
159 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
160 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
161 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
162 RNAO RNA ontology
163 RO Relations Ontology http://purl.obolibrary.org/obo/CARO_0000006
164 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
165 RXNO Name Reaction Ontology
166 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
167 SBO Systems Biology
168 SIBO Social Insect Behavior Ontology
169 SIO Semanticscience Integrated Ontology
170 SO Sequence types and features http://purl.obolibrary.org/obo/SO_0000644
171 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
172 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
173 STATO The Statistical Methods Ontology
174 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
175 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
176 TADS Tick gross anatomy http://purl.obolibrary.org/obo/TADS_0000134
177 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
178 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
179 TCMDPO Traditional Chiinese Medicine DPO
180 TFClass_human Ontology of Human Transcription Factors
181 TGMA Mosquito gross anatomy http://purl.obolibrary.org/obo/TGMA_0001389
182 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
183 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
184 TTO Teleost taxonomy http://purl.obolibrary.org/obo/TTO_102489
185 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
186 UO Units of measurement http://purl.obolibrary.org/obo/UO_0000256
187 UPHENO Combined phenotype ontology
188 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
189 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
190 VICO Vaccination Informed Consent Ontology
191 VIVO-ISF VIVO-ISF
192 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
193 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
194 VT Vertebrate trait
195 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
196 WBbt C. elegans gross anatomy http://purl.obolibrary.org/obo/WBbt_0006365
197 WBLS C. elegans development http://purl.obolibrary.org/obo/WBls_0000074
198 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
199 XAO Xenopus anatomy and development http://purl.obolibrary.org/obo/XAO_0004086
200 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
201 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
202 ZECO Zebrafish Experimental Conditions Ontology
203 ZFA Zebrafish anatomy and development http://purl.obolibrary.org/obo/ZFA_0000027
204 ZFS Zebrafish developmental stages http://purl.obolibrary.org/obo/ZFS_0000022