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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AGRO Agronomy Ontology
7 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
8 AMPHX The Amphioxus Development and Anatomy Ontology
9 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
10 APOLLO_SV Apollo Structured Vocabulary
11 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
12 ARO Antibiotic Resistance Ontology
13 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
14 BAO BioAssay Ontology
15 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
16 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
17 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
18 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
19 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
20 BOOTStrep Gene Regulation Ontology
21 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
22 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
23 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
24 CCFO Common Coordinate Framework Ontology
25 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
26 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
27 CDNO Compositional Dietary Nutrition Ontology
28 CEPH Cephalopod Ontology
29 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
30 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
31 CHIRO CHEBI Integrated Role Ontology
32 CHMO Chemical Methods Ontology
33 CIDO Coronavirus Infectious Disease Ontology
34 CIO Confidence Information Ontology
35 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
36 CLAO Collembola Anatomy Ontology
37 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
38 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
39 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
40 CLYH Clytia hemisphaerica Development and Anatomy Ontology
41 CMF CranioMaxilloFacial ontology
42 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
43 COB Core Ontology for Biology and Biomedicine
44 COLAO Coleoptera Anatomy Ontology (COLAO)
45 CRO Contributor Role Ontology
46 CTCAE-OAEview OAE CTCAE view
47 CTENO Ctenophore Ontology
48 CTO CTO: Core Ontology of Clinical Trials
49 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
50 d-acts Ontology of Document Acts
51 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
52 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
53 DDPHENO Dictyostelium discoideum phenotype ontology
54 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
55 DINTO The Drug-Drug Interactions Ontology
56 DISDRIV Disease Drivers Ontology
57 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
58 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
59 DUO Data Use Ontology
60 ECAO The Echinoderm Anatomy and Development Ontology
61 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
62 ECOCORE An ontology of core ecological entities
63 ECTO Environmental conditions, treatments and exposures ontology
64 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
65 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
66 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
67 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
68 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
69 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
70 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
71 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
72 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
73 EPIO Epilepsy Ontology
74 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
75 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
76 EUPATH VEuPathDB ontology
77 EV eVOC (Expressed Sequence Annotation for Humans)
78 ExO Exposure ontology
79 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
80 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
81 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
82 FBcv FlyBase Controlled Vocabulary
83 FBcv Drosophila Phenotype Ontology
84 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
85 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
86 FIDEO Food Interactions with Drugs Evidence Ontology
87 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
88 FLOPO Flora Phenotype Ontology
89 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
90 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
91 FOBI Food-Biomarker Ontology
92 FOODON Food Ontology
93 FOVT FuTRES Ontology of Vertebrate Traits
94 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
95 GAZ Gazetteer
96 GECKO Genomics Cohorts Knowledge Ontology
97 GENEPIO Genomic Epidemiology Ontology
98 GENO Genotype Ontology
99 GEO Geographical Entity Ontology
100 GNO Glycan Naming and Subsumption Ontology (GNOme)
101 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
102 GRO Cereal Plant Gross Anatomy
103 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
104 HABRONATTUS Habronattus courtship
105 HANCESTRO Human Ancestry Ontology
106 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
107 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
108 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
109 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
110 HsapDv Human Developmental Stages
111 HSO Health Surveillance Ontology
112 HTN Hypertension Ontology
113 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
114 IAO-Onto-Meta IAO Ontology Metadata
115 ICDO International Classification of Disease Ontology
116 ICEO Integrative and Conjugative Element Ontology
117 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
118 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
119 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
120 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
121 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
122 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
123 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
124 IPR Protein Domains
125 KISAO Kinetic Simulation Algorithm Ontology
126 KTAO Kidney Tissue Atlas Ontology
127 LABO clinical LABoratory Ontology
128 LEPAO Lepidoptera Anatomy Ontology
129 LINCS-CLOview CLO LINCS view
130 LiPrO Lipid Ontology
131 LOGGERHEAD Loggerhead nesting
132 LTHIDO LTHIDO
133 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
134 MAMO Mathematical modeling ontology
135 MAO Multiple alignment
136 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
137 MAXO Medical Action Ontology
138 MCO Microbial Conditions Ontology
139 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
140 MFMO Mammalian Feeding Muscle Ontology
141 MFO Medaka fish anatomy and development
142 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
143 MFOMD Mental Disease Ontology
144 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
145 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
146 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
147 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
148 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
149 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
150 MmusDv Mouse Developmental Stages
151 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
152 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
153 MONDO Mondo Disease Ontology
154 MOP Molecular Process Ontology
155 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
156 MPATH Mouse pathology ontology
157 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
158 MPIO Minimum PDDI Information Ontology
159 MRO MHC Restriction Ontology
160 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
161 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
162 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
163 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
164 ncithesaurus NCI Thesaurus
165 NCRO Non-Coding RNA Ontology
166 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
167 NFO NFO
168 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
169 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
170 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
171 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
172 NOMEN NOMEN - A nomenclatural ontology for biological names
173 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
174 OARCS Ontology of Arthropod Circulatory Systems
175 OBA Ontology of Biological Attributes
176 OBCS Ontology of Biological and Clinical Statistics
177 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
178 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
179 OBIB Ontology for Biobanking
180 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
181 OboInOwl OboInOwl OBO Format metamodel
182 OBO_REL OBO relationship types (legacy)
183 OCE Ontology of Chemical Elements
184 OCMR Ontology of Chinese Medicine for Rheumatism
185 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
186 OCVDAE Ontology of Cardiovascular Drug Adverse Events
187 ODAE Ontology of Drug Adverse Events
188 ODNAE Ontologyof Drug Neuropathy Adverse Events
189 OGG The Ontology of Genes and Genomes
190 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
191 OGG-Bac Ontology of Genes and Genomes-Bacteria
192 OGG-Base Ontology of Genes and Genomes-Base
193 OGG-Bru Ontology of Genes and Genomes - Brucella
194 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
195 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
196 OGG-Dr Ontology of Genes and Genomes - Zebrafish
197 OGG-Hs Ontology of Genes and Genomes-Human
198 OGG-Mm Ontology of Genes and Genomes - Mouse
199 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
200 OGG-Sc Ontology of Genes and Genomes - Yeast
201 OGG-Vir Ontology of Genes and Genomes - Viruses
202 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
203 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
204 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
205 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
206 OHMI Ontology of Host-Microbiome Interactions
207 OHPI Ontology of Host Pathogen Interactions
208 OLAM Ontology of Laboratory Animal Medicine
209 OlatDv Medaka Developmental Stages
210 OLOBO Ontology for Linking Biological and Medical Ontologies
211 OMIABIS Ontologized MIABIS
212 OMIT Ontology for MIRNA Target
213 OMO OBO Metadata Ontology
214 OMP Ontology of Microbial Phenotypes
215 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
216 ONE Ontology for Nutritional Epidemiology
217 ONS Ontology for Nutritional Studies
218 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
219 ONTONEO Obstetric and Neonatal Ontology
220 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
221 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
222 OPMI Ontology of Precision Medicine and Investigation
223 ORNASEQ Ontology of RNA Sequencing
224 OSCI Ontology for Stem Cell Investigations
225 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
226 PAO Plant Anatomy Ontology
227 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
228 PCL Provisional Cell Ontology
229 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
230 PDRO The Prescription of Drugs Ontology
231 PdumDv Platynereis Developmental Stages
232 PD_ST Platynereis stage ontology
233 PECO Plant Experimental Conditions Ontology
234 PGDSO Plant Growth and Development Stage
235 PHIPO Pathogen Host Interaction Phenotype Ontology
236 PLANA planaria-ontology
237 PLANP Planarian Phenotype Ontology
238 PLO Plasmodium life cycle
239 PNO Proper Name Ontology
240 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
241 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
242 PPO Plant Phenology Ontology
243 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
244 PROCO Process Chemistry Ontology
245 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
246 PSDO Performance Summary Display Ontology
247 PSO Plant Stress Ontology
248 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
249 RBO Radiation Biology Ontology
250 Reactome Reactome Ontology
251 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
252 RESID Protein covalent bond
253 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
254 RNAO RNA ontology
255 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
256 ROLEO Role Ontology
257 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
258 RXNO Name Reaction Ontology
259 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
260 SBO Systems Biology Ontology
261 SCDO Sickle Cell Disease Ontology
262 SDGIO Sustainable Development Goals Interface Ontology
263 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
264 SEPIO Scientific Evidence and Provenance Information Ontology
265 SIBO Social Insect Behavior Ontology
266 SIO Semanticscience Integrated Ontology
267 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
268 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
269 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
270 STATO The Statistical Methods Ontology
271 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
272 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
273 T4FS terms4FAIRskills
274 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
275 TAHE Terminology of Anatomy of Human Embryology
276 TAHH Terminology of Anatomy of Human Histology
277 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
278 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
279 TCMDPO Traditional Chiinese Medicine DPO
280 TFClass_human Ontology of Human Transcription Factors
281 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
282 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
283 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
284 TSO Transportation System Ontology
285 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
286 TXPO Toxic Process Ontology
287 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
288 uberon-basic Uber anatomy ontology, basic version
289 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
290 uberon_depictions uberon_depictions
291 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
292 UPA Unipathway
293 UPHENO Unified phenotype ontology (uPheno)
294 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
295 VBO Vertebrate Breed Ontology
296 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
297 VICO Vaccination Informed Consent Ontology
298 VIDO Virus Infectious Disease Ontology
299 VIO Vaccine Investigation Ontology
300 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
301 VIVO-ISF VIVO-ISF
302 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
303 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
304 VT Vertebrate trait ontology
305 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
306 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
307 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
308 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
309 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
310 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
311 XL Cross-linker reagents ontology
312 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
313 XPO Xenopus Phenotype Ontology
314 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
315 ZEA Maize gross anatomy
316 ZECO Zebrafish Experimental Conditions Ontology
317 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
318 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
319 ZP Zebrafish Phenotype Ontology