Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AfPO African Population Ontology
8 AGRO Agronomy Ontology
9 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
10 AMPHX The Amphioxus Development and Anatomy Ontology
11 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
12 APOLLO_SV Apollo Structured Vocabulary
13 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
14 ARO Antibiotic Resistance Ontology
15 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
16 BAO BioAssay Ontology
17 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
18 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
19 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
20 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
21 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
22 BOOTStrep Gene Regulation Ontology
23 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
24 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
25 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
26 CCFO Common Coordinate Framework Ontology
27 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
28 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
29 CDNO Compositional Dietary Nutrition Ontology
30 CEPH Cephalopod Ontology
31 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
32 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
33 CHIRO CHEBI Integrated Role Ontology
34 CHMO Chemical Methods Ontology
35 CIDO Coronavirus Infectious Disease Ontology
36 CIO Confidence Information Ontology
37 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
38 CLAO Collembola Anatomy Ontology
39 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
40 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
41 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
42 CLYH Clytia hemisphaerica Development and Anatomy Ontology
43 CMF CranioMaxilloFacial ontology
44 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
45 COB Core Ontology for Biology and Biomedicine
46 COLAO Coleoptera Anatomy Ontology (COLAO)
47 CRO Contributor Role Ontology
49 CTENO Ctenophore Ontology
50 CTO CTO: Core Ontology of Clinical Trials
51 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
52 d-acts Ontology of Document Acts
53 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
54 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
55 DDPHENO Dictyostelium discoideum phenotype ontology
56 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
57 DINTO The Drug-Drug Interactions Ontology
58 DISDRIV Disease Drivers Ontology
59 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
60 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
61 DUO Data Use Ontology
62 ECAO The Echinoderm Anatomy and Development Ontology
63 ECO Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/ECO_0000321
64 ECOCORE An ontology of core ecological entities
65 ECTO Environmental conditions, treatments and exposures ontology
66 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
67 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
68 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
69 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
70 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
71 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
72 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
73 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
74 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
75 EPIO Epilepsy Ontology
76 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
77 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
78 EUPATH VEuPathDB ontology
79 EV eVOC (Expressed Sequence Annotation for Humans)
80 ExO Exposure ontology
81 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
82 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
83 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
84 FBcv FlyBase Controlled Vocabulary
85 FBcv Drosophila Phenotype Ontology
86 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
87 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
88 FIDEO Food Interactions with Drugs Evidence Ontology
89 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
90 FLOPO Flora Phenotype Ontology
91 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
92 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
93 FOBI Food-Biomarker Ontology
94 FOODON Food Ontology
95 FOVT FuTRES Ontology of Vertebrate Traits
96 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
97 GALLONT Plant Gall Ontology
98 GAZ Gazetteer
99 GECKO Genomics Cohorts Knowledge Ontology
100 GENEPIO Genomic Epidemiology Ontology
101 GENO Genotype Ontology
102 GEO Geographical Entity Ontology
103 GNO Glycan Naming and Subsumption Ontology (GNOme)
104 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
105 GRO Cereal Plant Gross Anatomy
106 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
107 HABRONATTUS Habronattus courtship
108 HANCESTRO Human Ancestry Ontology
109 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
110 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
111 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
112 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
113 HsapDv Human Developmental Stages
114 HSO Health Surveillance Ontology
115 HTN Hypertension Ontology
116 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
117 IAO-Onto-Meta IAO Ontology Metadata
118 ICDO International Classification of Disease Ontology
119 ICEO Integrative and Conjugative Element Ontology
120 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
121 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
122 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
123 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
124 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
125 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
126 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
127 IPR Protein Domains
128 KISAO Kinetic Simulation Algorithm Ontology
129 KTAO Kidney Tissue Atlas Ontology
130 LABO clinical LABoratory Ontology
131 LEPAO Lepidoptera Anatomy Ontology
132 LINCS-CLOview CLO LINCS view
133 LiPrO Lipid Ontology
134 LOGGERHEAD Loggerhead nesting
136 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
137 MAMO Mathematical modeling ontology
138 MAO Multiple alignment
139 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
140 MAXO Medical Action Ontology
141 MCO Microbial Conditions Ontology
142 MCRO Model Card Report Ontology
143 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
144 MFMO Mammalian Feeding Muscle Ontology
145 MFO Medaka fish anatomy and development
146 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
147 MFOMD Mental Disease Ontology
148 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
149 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
150 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
151 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
152 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
153 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
154 MmusDv Mouse Developmental Stages
155 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
156 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
157 MONDO Mondo Disease Ontology
158 MOP Molecular Process Ontology
159 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
160 MPATH Mouse pathology ontology
161 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
162 MPIO Minimum PDDI Information Ontology
163 MRO MHC Restriction Ontology
164 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
165 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
166 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
167 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
168 ncithesaurus NCI Thesaurus
169 NCRO Non-Coding RNA Ontology
170 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
172 NGBO Next Generation Biobanking Ontology
173 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
174 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
175 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
176 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
177 NOMEN NOMEN - A nomenclatural ontology for biological names
178 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
179 OARCS Ontology of Arthropod Circulatory Systems
180 OBA Ontology of Biological Attributes
181 OBCS Ontology of Biological and Clinical Statistics
182 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
184 OBIB Ontology for Biobanking
185 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
186 OboInOwl OboInOwl OBO Format metamodel
187 OBO_REL OBO relationship types (legacy)
188 OCCO Occupation Ontology
189 OCE Ontology of Chemical Elements
190 OCMR Ontology of Chinese Medicine for Rheumatism
191 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
192 OCVDAE Ontology of Cardiovascular Drug Adverse Events
193 ODAE Ontology of Drug Adverse Events
194 ODNAE Ontologyof Drug Neuropathy Adverse Events
195 OGG The Ontology of Genes and Genomes
196 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
197 OGG-Bac Ontology of Genes and Genomes-Bacteria
198 OGG-Base Ontology of Genes and Genomes-Base
199 OGG-Bru Ontology of Genes and Genomes - Brucella
200 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
201 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
202 OGG-Dr Ontology of Genes and Genomes - Zebrafish
203 OGG-Hs Ontology of Genes and Genomes-Human
204 OGG-Mm Ontology of Genes and Genomes - Mouse
205 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
206 OGG-Sc Ontology of Genes and Genomes - Yeast
207 OGG-Vir Ontology of Genes and Genomes - Viruses
208 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
209 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
210 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
211 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
212 OHMI Ontology of Host-Microbiome Interactions
213 OHPI Ontology of Host Pathogen Interactions
214 OLAM Ontology of Laboratory Animal Medicine
215 OlatDv Medaka Developmental Stages
216 OLOBO Ontology for Linking Biological and Medical Ontologies
217 OMIABIS Ontologized MIABIS
218 OMIT Ontology for MIRNA Target
219 OMO OBO Metadata Ontology
220 OMP Ontology of Microbial Phenotypes
221 OMRSE Ontology for Modeling and Representation of Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
222 ONE Ontology for Nutritional Epidemiology
223 ONS Ontology for Nutritional Studies
224 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
225 ONTONEO Obstetric and Neonatal Ontology
226 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
227 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
228 OPMI Ontology of Precision Medicine and Investigation
229 ORNASEQ Ontology of RNA Sequencing
230 OSCI Ontology for Stem Cell Investigations
231 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
232 PAO Plant Anatomy Ontology
233 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
234 PCL Provisional Cell Ontology
235 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
236 PDRO The Prescription of Drugs Ontology
237 PdumDv Platynereis Developmental Stages
238 PD_ST Platynereis stage ontology
239 PECO Plant Experimental Conditions Ontology
240 PGDSO Plant Growth and Development Stage
241 PHIPO Pathogen Host Interaction Phenotype Ontology
242 PLANA planaria-ontology
243 PLANP Planarian Phenotype Ontology
244 PLO Plasmodium life cycle
245 PNO Proper Name Ontology
246 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
247 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
248 PPO Plant Phenology Ontology
249 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
250 PROCO Process Chemistry Ontology
251 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
252 PSDO Performance Summary Display Ontology
253 PSO Plant Stress Ontology
254 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
255 RBO Radiation Biology Ontology
256 Reactome Reactome Ontology
257 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
258 RESID Protein covalent bond
259 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
260 RNAO RNA ontology
261 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
262 ROLEO Role Ontology
263 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
264 RXNO Name Reaction Ontology
265 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
266 SBO Systems Biology Ontology
267 SCDO Sickle Cell Disease Ontology
268 SDGIO Sustainable Development Goals Interface Ontology
269 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
270 SEPIO Scientific Evidence and Provenance Information Ontology
271 SIBO Social Insect Behavior Ontology
272 SIO Semanticscience Integrated Ontology
273 SLSO Space Life Sciences Ontology
274 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
275 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
276 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
277 STATO The Statistical Methods Ontology
278 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
279 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
280 T4FS terms4FAIRskills
281 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
282 TAHE Terminology of Anatomy of Human Embryology
283 TAHH Terminology of Anatomy of Human Histology
284 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
285 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
286 TCMDPO Traditional Chiinese Medicine DPO
287 TFClass_human Ontology of Human Transcription Factors
288 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
289 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
290 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
291 TSO Transportation System Ontology
292 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
293 TXPO Toxic Process Ontology
294 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
295 uberon-basic Uber anatomy ontology, basic version
296 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
297 uberon_depictions uberon_depictions
298 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
299 UPA Unipathway
300 UPHENO Unified phenotype ontology (uPheno)
301 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
302 VBO Vertebrate Breed Ontology
303 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
304 VICO Vaccination Informed Consent Ontology
305 VIDO Virus Infectious Disease Ontology
306 VIO Vaccine Investigation Ontology
307 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
309 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
310 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
311 VT Vertebrate trait ontology
312 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
313 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
314 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
315 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
316 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
317 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
318 XL Cross-linker reagents ontology
319 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
320 XPO Xenopus Phenotype Ontology
321 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
322 ZEA Maize gross anatomy
323 ZECO Zebrafish Experimental Conditions Ontology
324 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
325 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
326 ZP Zebrafish Phenotype Ontology