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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AfPO African Population Ontology
8 AGRO Agronomy Ontology
9 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
10 AMPHX The Amphioxus Development and Anatomy Ontology
11 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
12 APOLLO_SV Apollo Structured Vocabulary
13 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
14 ARO Antibiotic Resistance Ontology
15 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
16 BAO BioAssay Ontology
17 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
18 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
19 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
20 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
21 BIDO Bacteria Infectious Disease Ontology
22 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
23 BMONT Biomarker Ontology
24 BOOTStrep Gene Regulation Ontology
25 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
26 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
27 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
28 CCFO Common Coordinate Framework Ontology
29 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
30 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
31 CDNO Compositional Dietary Nutrition Ontology
32 CEPH Cephalopod Ontology
33 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
34 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
35 CHIRO CHEBI Integrated Role Ontology
36 CHMO Chemical Methods Ontology
37 CIDO Coronavirus Infectious Disease Ontology
38 CIO Confidence Information Ontology
39 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
40 CLAO Collembola Anatomy Ontology
41 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
42 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
43 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
44 CLYH Clytia hemisphaerica Development and Anatomy Ontology
45 CMF CranioMaxilloFacial ontology
46 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
47 COB Core Ontology for Biology and Biomedicine
48 COLAO Coleoptera Anatomy Ontology (COLAO)
49 CRO Contributor Role Ontology
50 CTCAE-OAEview OAE CTCAE view
51 CTENO Ctenophore Ontology
52 CTO CTO: Core Ontology of Clinical Trials
53 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
54 d-acts Ontology of Document Acts
55 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
56 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
57 DDPHENO Dictyostelium discoideum phenotype ontology
58 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
59 DINTO The Drug-Drug Interactions Ontology
60 DISDRIV Disease Drivers Ontology
61 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
62 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
63 DUO Data Use Ontology
64 ECAO The Echinoderm Anatomy and Development Ontology
65 ECO Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/ECO_0000321
66 ECOCORE An ontology of core ecological entities
67 ECTO Environmental conditions, treatments and exposures ontology
68 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
69 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
70 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
71 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
72 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
73 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
74 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
75 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
76 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
77 EPIO Epilepsy Ontology
78 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
79 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
80 EUPATH VEuPathDB ontology
81 EV eVOC (Expressed Sequence Annotation for Humans)
82 EXMO Exercise Medicine Ontology
83 ExO Exposure ontology
84 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
85 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
86 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
87 FBcv FlyBase Controlled Vocabulary
88 FBcv Drosophila Phenotype Ontology
89 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
90 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
91 FIDEO Food Interactions with Drugs Evidence Ontology
92 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
93 FLOPO Flora Phenotype Ontology
94 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
95 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
96 FOBI Food-Biomarker Ontology
97 FOODON Food Ontology
98 FOVT FuTRES Ontology of Vertebrate Traits
99 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
100 GALLONT Plant Gall Ontology
101 GAZ Gazetteer
102 GECKO Genomics Cohorts Knowledge Ontology
103 GENEPIO Genomic Epidemiology Ontology
104 GENO Genotype Ontology
105 GEO Geographical Entity Ontology
106 GNO Glycan Naming and Subsumption Ontology (GNOme)
107 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
108 GRO Cereal Plant Gross Anatomy
109 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
110 HABRONATTUS Habronattus courtship
111 HANCESTRO Human Ancestry Ontology
112 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
113 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
114 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
115 HP Human Phenotype Ontology (HPO) http://purl.obolibrary.org/obo/HP_0008736
116 HsapDv Human Developmental Stages
117 HSO Health Surveillance Ontology
118 HTN Hypertension Ontology
119 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
120 IAO-Onto-Meta IAO Ontology Metadata
121 ICDO International Classification of Disease Ontology
122 ICEO Integrative and Conjugative Element Ontology
123 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
124 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
125 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
126 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
127 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
128 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
129 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
130 IPR Protein Domains
131 KISAO Kinetic Simulation Algorithm Ontology
132 KTAO Kidney Tissue Atlas Ontology
133 LABO clinical LABoratory Ontology
134 LEPAO Lepidoptera Anatomy Ontology
135 LINCS-CLOview CLO LINCS view
136 LiPrO Lipid Ontology
137 LOGGERHEAD Loggerhead nesting
138 LTHIDO LTHIDO
139 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
140 MAMO Mathematical modeling ontology
141 MAO Multiple alignment
142 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
143 MAXO Medical Action Ontology
144 MCO Microbial Conditions Ontology
145 MCRO Model Card Report Ontology
146 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
147 MFMO Mammalian Feeding Muscle Ontology
148 MFO Medaka fish anatomy and development
149 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
150 MFOMD Mental Disease Ontology
151 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
152 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
153 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
154 MIDO Mycosis Infectious Disease Ontology
155 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
156 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
157 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
158 MmusDv Mouse Developmental Stages
159 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
160 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
161 MONDO Mondo Disease Ontology
162 MOP Molecular Process Ontology
163 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
164 MPATH Mouse pathology ontology
165 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
166 MPIO Minimum PDDI Information Ontology
167 MRO MHC Restriction Ontology
168 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
169 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
170 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
171 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
172 ncithesaurus NCI Thesaurus
173 NCRO Non-Coding RNA Ontology
174 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
175 NFO NFO
176 NGBO Next Generation Biobanking Ontology
177 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
178 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
179 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
180 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
181 NOMEN NOMEN - A nomenclatural ontology for biological names
182 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
183 OARCS Ontology of Arthropod Circulatory Systems
184 OBA Ontology of Biological Attributes
185 OBCS Ontology of Biological and Clinical Statistics
186 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
187 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
188 OBIB Ontology for Biobanking
189 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
190 OboInOwl OboInOwl OBO Format metamodel
191 OBO_REL OBO relationship types (legacy)
192 OCCO Occupation Ontology
193 OCE Ontology of Chemical Elements
194 OCMR Ontology of Chinese Medicine for Rheumatism
195 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
196 OCVDAE Ontology of Cardiovascular Drug Adverse Events
197 ODAE Ontology of Drug Adverse Events
198 ODNAE Ontologyof Drug Neuropathy Adverse Events
199 OGG The Ontology of Genes and Genomes
200 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
201 OGG-Bac Ontology of Genes and Genomes-Bacteria
202 OGG-Base Ontology of Genes and Genomes-Base
203 OGG-Bru Ontology of Genes and Genomes - Brucella
204 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
205 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
206 OGG-Dr Ontology of Genes and Genomes - Zebrafish
207 OGG-Hs Ontology of Genes and Genomes-Human
208 OGG-Mm Ontology of Genes and Genomes - Mouse
209 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
210 OGG-Sc Ontology of Genes and Genomes - Yeast
211 OGG-Vir Ontology of Genes and Genomes - Viruses
212 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
213 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
214 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
215 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
216 OHMI Ontology of Host-Microbiome Interactions
217 OHPI Ontology of Host Pathogen Interactions
218 OLAM Ontology of Laboratory Animal Medicine
219 OlatDv Medaka Developmental Stages
220 OLOBO Ontology for Linking Biological and Medical Ontologies
221 OM Ontology of units of Measure
222 OM Ontology of units of Measure
223 OMIABIS Ontologized MIABIS
224 OMIT Ontology for MIRNA Target
225 OMO OBO Metadata Ontology
226 OMP Ontology of Microbial Phenotypes
227 OMRSE Ontology for Modeling and Representation of Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
228 ONE Ontology for Nutritional Epidemiology
229 ONS Ontology for Nutritional Studies
230 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
231 ONTONEO Obstetric and Neonatal Ontology
232 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
233 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
234 OPMI Ontology of Precision Medicine and Investigation
235 ORNASEQ Ontology of RNA Sequencing
236 OSCI Ontology for Stem Cell Investigations
237 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
238 PAO Plant Anatomy Ontology
239 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
240 PBPKO Physiologically-Based Pharmacokinetic Ontology
241 PCL Provisional Cell Ontology
242 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
243 PDRO The Prescription of Drugs Ontology
244 PdumDv Platynereis Developmental Stages
245 PD_ST Platynereis stage ontology
246 PECO Plant Experimental Conditions Ontology
247 PGDSO Plant Growth and Development Stage
248 PHASES Promoting Health Aging through Semantic Enrichment of Solitude Research (PHASES) Ontology
249 PHIPO Pathogen Host Interaction Phenotype Ontology
250 PIDO Parasite Infectious Disease Ontology
251 PLANA planaria-ontology
252 PLANP Planarian Phenotype Ontology
253 PLO Plasmodium life cycle
254 PNO Proper Name Ontology
255 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
256 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
257 PPO Plant Phenology Ontology
258 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
259 PROCO Process Chemistry Ontology
260 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
261 PSDO Performance Summary Display Ontology
262 PSO Plant Stress Ontology
263 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
264 RBO Radiation Biology Ontology
265 Reactome Reactome Ontology
266 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
267 RESID Protein covalent bond
268 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
269 RNAO RNA ontology
270 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
271 ROLEO Role Ontology
272 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
273 RXNO Name Reaction Ontology
274 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
275 SBO Systems Biology Ontology
276 SCDO Sickle Cell Disease Ontology
277 SCO Sustainability Core Ontology
278 SDGIO Sustainable Development Goals Interface Ontology
279 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
280 SEPIO Scientific Evidence and Provenance Information Ontology
281 SIBO Social Insect Behavior Ontology
282 SIO Semanticscience Integrated Ontology
283 SLSO Space Life Sciences Ontology
284 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
285 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
286 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
287 STATO The Statistical Methods Ontology
288 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
289 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
290 T4FS terms4FAIRskills
291 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
292 TAHE Terminology of Anatomy of Human Embryology
293 TAHH Terminology of Anatomy of Human Histology
294 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
295 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
296 TCMDPO Traditional Chiinese Medicine DPO
297 TFClass_human Ontology of Human Transcription Factors
298 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
299 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
300 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
301 TSO Transportation System Ontology
302 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
303 TXPO Toxic Process Ontology
304 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
305 uberon-basic Uber anatomy ontology, basic version
306 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
307 uberon_depictions uberon_depictions
308 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
309 UPA Unipathway
310 UPHENO Unified Phenotype Ontology (uPheno)
311 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
312 VBO Vertebrate Breed Ontology
313 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
314 VICO Vaccination Informed Consent Ontology
315 VIDO Virus Infectious Disease Ontology
316 VIO Vaccine Investigation Ontology
317 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
318 VIVO-ISF VIVO-ISF
319 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
320 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
321 VT Vertebrate trait ontology
322 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
323 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
324 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
325 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
326 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
327 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
328 XL Cross-linker reagents ontology
329 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
330 XPO Xenopus Phenotype Ontology
331 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
332 ZEA Maize gross anatomy
333 ZECO Zebrafish Experimental Conditions Ontology
334 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
335 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
336 ZP Zebrafish Phenotype Ontology