Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AGRO Agronomy Ontology
8 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
9 AMPHX The Amphioxus Development and Anatomy Ontology
10 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
11 APOLLO_SV Apollo Structured Vocabulary
12 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
13 ARO Antibiotic Resistance Ontology
14 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
15 BAO BioAssay Ontology
16 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
17 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
18 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
19 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
20 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
21 BOOTStrep Gene Regulation Ontology
22 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
23 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
24 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
25 CCFO Common Coordinate Framework Ontology
26 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
27 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
28 CDNO Compositional Dietary Nutrition Ontology
29 CEPH Cephalopod Ontology
30 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
31 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
32 CHIRO CHEBI Integrated Role Ontology
33 CHMO Chemical Methods Ontology
34 CIDO Coronavirus Infectious Disease Ontology
35 CIO Confidence Information Ontology
36 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
37 CLAO Collembola Anatomy Ontology
38 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
39 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
40 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
41 CLYH Clytia hemisphaerica Development and Anatomy Ontology
42 CMF CranioMaxilloFacial ontology
43 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
44 COB Core Ontology for Biology and Biomedicine
45 COLAO Coleoptera Anatomy Ontology (COLAO)
46 CRO Contributor Role Ontology
48 CTENO Ctenophore Ontology
49 CTO CTO: Core Ontology of Clinical Trials
50 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
51 d-acts Ontology of Document Acts
52 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
53 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
54 DDPHENO Dictyostelium discoideum phenotype ontology
55 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
56 DINTO The Drug-Drug Interactions Ontology
57 DISDRIV Disease Drivers Ontology
58 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
59 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
60 DUO Data Use Ontology
61 ECAO The Echinoderm Anatomy and Development Ontology
62 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
63 ECOCORE An ontology of core ecological entities
64 ECTO Environmental conditions, treatments and exposures ontology
65 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
66 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
67 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
68 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
69 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
70 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
71 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
72 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
73 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
74 EPIO Epilepsy Ontology
75 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
76 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
77 EUPATH VEuPathDB ontology
78 EV eVOC (Expressed Sequence Annotation for Humans)
79 ExO Exposure ontology
80 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
81 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
82 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
83 FBcv FlyBase Controlled Vocabulary
84 FBcv Drosophila Phenotype Ontology
85 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
86 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
87 FIDEO Food Interactions with Drugs Evidence Ontology
88 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
89 FLOPO Flora Phenotype Ontology
90 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
91 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
92 FOBI Food-Biomarker Ontology
93 FOODON Food Ontology
94 FOVT FuTRES Ontology of Vertebrate Traits
95 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
96 GAZ Gazetteer
97 GECKO Genomics Cohorts Knowledge Ontology
98 GENEPIO Genomic Epidemiology Ontology
99 GENO Genotype Ontology
100 GEO Geographical Entity Ontology
101 GNO Glycan Naming and Subsumption Ontology (GNOme)
102 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
103 GRO Cereal Plant Gross Anatomy
104 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
105 HABRONATTUS Habronattus courtship
106 HANCESTRO Human Ancestry Ontology
107 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
108 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
109 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
110 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
111 HsapDv Human Developmental Stages
112 HSO Health Surveillance Ontology
113 HTN Hypertension Ontology
114 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
115 IAO-Onto-Meta IAO Ontology Metadata
116 ICDO International Classification of Disease Ontology
117 ICEO Integrative and Conjugative Element Ontology
118 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
119 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
120 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
121 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
122 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
123 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
124 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
125 IPR Protein Domains
126 KISAO Kinetic Simulation Algorithm Ontology
127 KTAO Kidney Tissue Atlas Ontology
128 LABO clinical LABoratory Ontology
129 LEPAO Lepidoptera Anatomy Ontology
130 LINCS-CLOview CLO LINCS view
131 LiPrO Lipid Ontology
132 LOGGERHEAD Loggerhead nesting
134 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
135 MAMO Mathematical modeling ontology
136 MAO Multiple alignment
137 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
138 MAXO Medical Action Ontology
139 MCO Microbial Conditions Ontology
140 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
141 MFMO Mammalian Feeding Muscle Ontology
142 MFO Medaka fish anatomy and development
143 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
144 MFOMD Mental Disease Ontology
145 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
146 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
147 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
148 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
149 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
150 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
151 MmusDv Mouse Developmental Stages
152 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
153 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
154 MONDO Mondo Disease Ontology
155 MOP Molecular Process Ontology
156 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
157 MPATH Mouse pathology ontology
158 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
159 MPIO Minimum PDDI Information Ontology
160 MRO MHC Restriction Ontology
161 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
162 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
163 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
164 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
165 ncithesaurus NCI Thesaurus
166 NCRO Non-Coding RNA Ontology
167 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
169 NGBO Next Generation Biobanking Ontology
170 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
171 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
172 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
173 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
174 NOMEN NOMEN - A nomenclatural ontology for biological names
175 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
176 OARCS Ontology of Arthropod Circulatory Systems
177 OBA Ontology of Biological Attributes
178 OBCS Ontology of Biological and Clinical Statistics
179 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
181 OBIB Ontology for Biobanking
182 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
183 OboInOwl OboInOwl OBO Format metamodel
184 OBO_REL OBO relationship types (legacy)
185 OCE Ontology of Chemical Elements
186 OCMR Ontology of Chinese Medicine for Rheumatism
187 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
188 OCVDAE Ontology of Cardiovascular Drug Adverse Events
189 ODAE Ontology of Drug Adverse Events
190 ODNAE Ontologyof Drug Neuropathy Adverse Events
191 OGG The Ontology of Genes and Genomes
192 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
193 OGG-Bac Ontology of Genes and Genomes-Bacteria
194 OGG-Base Ontology of Genes and Genomes-Base
195 OGG-Bru Ontology of Genes and Genomes - Brucella
196 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
197 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
198 OGG-Dr Ontology of Genes and Genomes - Zebrafish
199 OGG-Hs Ontology of Genes and Genomes-Human
200 OGG-Mm Ontology of Genes and Genomes - Mouse
201 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
202 OGG-Sc Ontology of Genes and Genomes - Yeast
203 OGG-Vir Ontology of Genes and Genomes - Viruses
204 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
205 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
206 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
207 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
208 OHMI Ontology of Host-Microbiome Interactions
209 OHPI Ontology of Host Pathogen Interactions
210 OLAM Ontology of Laboratory Animal Medicine
211 OlatDv Medaka Developmental Stages
212 OLOBO Ontology for Linking Biological and Medical Ontologies
213 OMIABIS Ontologized MIABIS
214 OMIT Ontology for MIRNA Target
215 OMO OBO Metadata Ontology
216 OMP Ontology of Microbial Phenotypes
217 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
218 ONE Ontology for Nutritional Epidemiology
219 ONS Ontology for Nutritional Studies
220 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
221 ONTONEO Obstetric and Neonatal Ontology
222 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
223 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
224 OPMI Ontology of Precision Medicine and Investigation
225 ORNASEQ Ontology of RNA Sequencing
226 OSCI Ontology for Stem Cell Investigations
227 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
228 PAO Plant Anatomy Ontology
229 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
230 PCL Provisional Cell Ontology
231 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
232 PDRO The Prescription of Drugs Ontology
233 PdumDv Platynereis Developmental Stages
234 PD_ST Platynereis stage ontology
235 PECO Plant Experimental Conditions Ontology
236 PGDSO Plant Growth and Development Stage
237 PHIPO Pathogen Host Interaction Phenotype Ontology
238 PLANA planaria-ontology
239 PLANP Planarian Phenotype Ontology
240 PLO Plasmodium life cycle
241 PNO Proper Name Ontology
242 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
243 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
244 PPO Plant Phenology Ontology
245 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
246 PROCO Process Chemistry Ontology
247 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
248 PSDO Performance Summary Display Ontology
249 PSO Plant Stress Ontology
250 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
251 RBO Radiation Biology Ontology
252 Reactome Reactome Ontology
253 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
254 RESID Protein covalent bond
255 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
256 RNAO RNA ontology
257 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
258 ROLEO Role Ontology
259 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
260 RXNO Name Reaction Ontology
261 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
262 SBO Systems Biology Ontology
263 SCDO Sickle Cell Disease Ontology
264 SDGIO Sustainable Development Goals Interface Ontology
265 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
266 SEPIO Scientific Evidence and Provenance Information Ontology
267 SIBO Social Insect Behavior Ontology
268 SIO Semanticscience Integrated Ontology
269 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
270 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
271 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
272 STATO The Statistical Methods Ontology
273 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
274 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
275 T4FS terms4FAIRskills
276 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
277 TAHE Terminology of Anatomy of Human Embryology
278 TAHH Terminology of Anatomy of Human Histology
279 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
280 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
281 TCMDPO Traditional Chiinese Medicine DPO
282 TFClass_human Ontology of Human Transcription Factors
283 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
284 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
285 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
286 TSO Transportation System Ontology
287 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
288 TXPO Toxic Process Ontology
289 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
290 uberon-basic Uber anatomy ontology, basic version
291 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
292 uberon_depictions uberon_depictions
293 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
294 UPA Unipathway
295 UPHENO Unified phenotype ontology (uPheno)
296 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
297 VBO Vertebrate Breed Ontology
298 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
299 VICO Vaccination Informed Consent Ontology
300 VIDO Virus Infectious Disease Ontology
301 VIO Vaccine Investigation Ontology
302 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
304 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
305 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
306 VT Vertebrate trait ontology
307 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
308 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
309 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
310 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
311 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
312 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
313 XL Cross-linker reagents ontology
314 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
315 XPO Xenopus Phenotype Ontology
316 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
317 ZEA Maize gross anatomy
318 ZECO Zebrafish Experimental Conditions Ontology
319 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
320 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
321 ZP Zebrafish Phenotype Ontology