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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AfPO African Population Ontology
8 AGRO Agronomy Ontology
9 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
10 AMPHX The Amphioxus Development and Anatomy Ontology
11 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
12 APOLLO_SV Apollo Structured Vocabulary
13 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
14 ARO Antibiotic Resistance Ontology
15 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
16 BAO BioAssay Ontology
17 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
18 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
19 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
20 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
21 BIDO Bacteria Infectious Disease Ontology
22 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
23 BMONT Biomarker Ontology
24 BOOTStrep Gene Regulation Ontology
25 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
26 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
27 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
28 CCFO Common Coordinate Framework Ontology
29 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
30 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
31 CDNO Compositional Dietary Nutrition Ontology
32 CEPH Cephalopod Ontology
33 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
34 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
35 CHIRO CHEBI Integrated Role Ontology
36 CHMO Chemical Methods Ontology
37 CIDO Coronavirus Infectious Disease Ontology
38 CIO Confidence Information Ontology
39 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
40 CLAO Collembola Anatomy Ontology
41 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
42 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
43 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
44 CLYH Clytia hemisphaerica Development and Anatomy Ontology
45 CMF CranioMaxilloFacial ontology
46 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
47 COB Core Ontology for Biology and Biomedicine
48 COLAO Coleoptera Anatomy Ontology (COLAO)
49 CRO Contributor Role Ontology
50 CTCAE-OAEview OAE CTCAE view
51 CTENO Ctenophore Ontology
52 CTO CTO: Core Ontology of Clinical Trials
53 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
54 d-acts Ontology of Document Acts
55 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
56 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
57 DDPHENO Dictyostelium discoideum phenotype ontology
58 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
59 DINTO The Drug-Drug Interactions Ontology
60 DISDRIV Disease Drivers Ontology
61 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
62 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
63 DUO Data Use Ontology
64 ECAO The Echinoderm Anatomy and Development Ontology
65 ECO Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/ECO_0000321
66 ECOCORE An ontology of core ecological entities
67 ECTO Environmental conditions, treatments and exposures ontology
68 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
69 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
70 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
71 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
72 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
73 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
74 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
75 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
76 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
77 EPIO Epilepsy Ontology
78 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
79 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
80 EUPATH VEuPathDB ontology
81 EV eVOC (Expressed Sequence Annotation for Humans)
82 ExO Exposure ontology
83 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
84 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
85 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
86 FBcv FlyBase Controlled Vocabulary
87 FBcv Drosophila Phenotype Ontology
88 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
89 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
90 FIDEO Food Interactions with Drugs Evidence Ontology
91 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
92 FLOPO Flora Phenotype Ontology
93 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
94 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
95 FOBI Food-Biomarker Ontology
96 FOODON Food Ontology
97 FOVT FuTRES Ontology of Vertebrate Traits
98 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
99 GALLONT Plant Gall Ontology
100 GAZ Gazetteer
101 GECKO Genomics Cohorts Knowledge Ontology
102 GENEPIO Genomic Epidemiology Ontology
103 GENO Genotype Ontology
104 GEO Geographical Entity Ontology
105 GNO Glycan Naming and Subsumption Ontology (GNOme)
106 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
107 GRO Cereal Plant Gross Anatomy
108 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
109 HABRONATTUS Habronattus courtship
110 HANCESTRO Human Ancestry Ontology
111 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
112 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
113 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
114 HP Human Phenotype Ontology (HPO) http://purl.obolibrary.org/obo/HP_0008736
115 HsapDv Human Developmental Stages
116 HSO Health Surveillance Ontology
117 HTN Hypertension Ontology
118 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
119 IAO-Onto-Meta IAO Ontology Metadata
120 ICDO International Classification of Disease Ontology
121 ICEO Integrative and Conjugative Element Ontology
122 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
123 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
124 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
125 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
126 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
127 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
128 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
129 IPR Protein Domains
130 KISAO Kinetic Simulation Algorithm Ontology
131 KTAO Kidney Tissue Atlas Ontology
132 LABO clinical LABoratory Ontology
133 LEPAO Lepidoptera Anatomy Ontology
134 LINCS-CLOview CLO LINCS view
135 LiPrO Lipid Ontology
136 LOGGERHEAD Loggerhead nesting
137 LTHIDO LTHIDO
138 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
139 MAMO Mathematical modeling ontology
140 MAO Multiple alignment
141 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
142 MAXO Medical Action Ontology
143 MCO Microbial Conditions Ontology
144 MCRO Model Card Report Ontology
145 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
146 MFMO Mammalian Feeding Muscle Ontology
147 MFO Medaka fish anatomy and development
148 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
149 MFOMD Mental Disease Ontology
150 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
151 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
152 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
153 MIDO Mycosis Infectious Disease Ontology
154 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
155 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
156 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
157 MmusDv Mouse Developmental Stages
158 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
159 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
160 MONDO Mondo Disease Ontology
161 MOP Molecular Process Ontology
162 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
163 MPATH Mouse pathology ontology
164 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
165 MPIO Minimum PDDI Information Ontology
166 MRO MHC Restriction Ontology
167 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
168 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
169 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
170 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
171 ncithesaurus NCI Thesaurus
172 NCRO Non-Coding RNA Ontology
173 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
174 NFO NFO
175 NGBO Next Generation Biobanking Ontology
176 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
177 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
178 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
179 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
180 NOMEN NOMEN - A nomenclatural ontology for biological names
181 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
182 OARCS Ontology of Arthropod Circulatory Systems
183 OBA Ontology of Biological Attributes
184 OBCS Ontology of Biological and Clinical Statistics
185 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
186 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
187 OBIB Ontology for Biobanking
188 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
189 OboInOwl OboInOwl OBO Format metamodel
190 OBO_REL OBO relationship types (legacy)
191 OCCO Occupation Ontology
192 OCE Ontology of Chemical Elements
193 OCMR Ontology of Chinese Medicine for Rheumatism
194 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
195 OCVDAE Ontology of Cardiovascular Drug Adverse Events
196 ODAE Ontology of Drug Adverse Events
197 ODNAE Ontologyof Drug Neuropathy Adverse Events
198 OGG The Ontology of Genes and Genomes
199 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
200 OGG-Bac Ontology of Genes and Genomes-Bacteria
201 OGG-Base Ontology of Genes and Genomes-Base
202 OGG-Bru Ontology of Genes and Genomes - Brucella
203 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
204 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
205 OGG-Dr Ontology of Genes and Genomes - Zebrafish
206 OGG-Hs Ontology of Genes and Genomes-Human
207 OGG-Mm Ontology of Genes and Genomes - Mouse
208 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
209 OGG-Sc Ontology of Genes and Genomes - Yeast
210 OGG-Vir Ontology of Genes and Genomes - Viruses
211 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
212 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
213 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
214 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
215 OHMI Ontology of Host-Microbiome Interactions
216 OHPI Ontology of Host Pathogen Interactions
217 OLAM Ontology of Laboratory Animal Medicine
218 OlatDv Medaka Developmental Stages
219 OLOBO Ontology for Linking Biological and Medical Ontologies
220 OM Ontology of units of Measure
221 OM Ontology of units of Measure
222 OMIABIS Ontologized MIABIS
223 OMIT Ontology for MIRNA Target
224 OMO OBO Metadata Ontology
225 OMP Ontology of Microbial Phenotypes
226 OMRSE Ontology for Modeling and Representation of Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
227 ONE Ontology for Nutritional Epidemiology
228 ONS Ontology for Nutritional Studies
229 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
230 ONTONEO Obstetric and Neonatal Ontology
231 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
232 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
233 OPMI Ontology of Precision Medicine and Investigation
234 ORNASEQ Ontology of RNA Sequencing
235 OSCI Ontology for Stem Cell Investigations
236 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
237 PAO Plant Anatomy Ontology
238 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
239 PCL Provisional Cell Ontology
240 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
241 PDRO The Prescription of Drugs Ontology
242 PdumDv Platynereis Developmental Stages
243 PD_ST Platynereis stage ontology
244 PECO Plant Experimental Conditions Ontology
245 PGDSO Plant Growth and Development Stage
246 PHASES Promoting Health Aging through Semantic Enrichment of Solitude Research (PHASES) Ontology
247 PHIPO Pathogen Host Interaction Phenotype Ontology
248 PIDO Parasite Infectious Disease Ontology
249 PLANA planaria-ontology
250 PLANP Planarian Phenotype Ontology
251 PLO Plasmodium life cycle
252 PNO Proper Name Ontology
253 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
254 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
255 PPO Plant Phenology Ontology
256 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
257 PROCO Process Chemistry Ontology
258 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
259 PSDO Performance Summary Display Ontology
260 PSO Plant Stress Ontology
261 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
262 RBO Radiation Biology Ontology
263 Reactome Reactome Ontology
264 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
265 RESID Protein covalent bond
266 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
267 RNAO RNA ontology
268 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
269 ROLEO Role Ontology
270 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
271 RXNO Name Reaction Ontology
272 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
273 SBO Systems Biology Ontology
274 SCDO Sickle Cell Disease Ontology
275 SCO Sustainability Core Ontology
276 SDGIO Sustainable Development Goals Interface Ontology
277 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
278 SEPIO Scientific Evidence and Provenance Information Ontology
279 SIBO Social Insect Behavior Ontology
280 SIO Semanticscience Integrated Ontology
281 SLSO Space Life Sciences Ontology
282 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
283 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
284 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
285 STATO The Statistical Methods Ontology
286 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
287 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
288 T4FS terms4FAIRskills
289 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
290 TAHE Terminology of Anatomy of Human Embryology
291 TAHH Terminology of Anatomy of Human Histology
292 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
293 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
294 TCMDPO Traditional Chiinese Medicine DPO
295 TFClass_human Ontology of Human Transcription Factors
296 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
297 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
298 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
299 TSO Transportation System Ontology
300 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
301 TXPO Toxic Process Ontology
302 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
303 uberon-basic Uber anatomy ontology, basic version
304 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
305 uberon_depictions uberon_depictions
306 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
307 UPA Unipathway
308 UPHENO Unified Phenotype Ontology (uPheno)
309 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
310 VBO Vertebrate Breed Ontology
311 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
312 VICO Vaccination Informed Consent Ontology
313 VIDO Virus Infectious Disease Ontology
314 VIO Vaccine Investigation Ontology
315 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
316 VIVO-ISF VIVO-ISF
317 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
318 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
319 VT Vertebrate trait ontology
320 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
321 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
322 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
323 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
324 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
325 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
326 XL Cross-linker reagents ontology
327 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
328 XPO Xenopus Phenotype Ontology
329 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
330 ZEA Maize gross anatomy
331 ZECO Zebrafish Experimental Conditions Ontology
332 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
333 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
334 ZP Zebrafish Phenotype Ontology