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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADW Animal natural history and life history
3 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
4 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
5 AGRO Agronomy Ontology
6 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
7 AMPHX The Amphioxus Development and Anatomy Ontology
8 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
9 APOLLO_SV Apollo Structured Vocabulary http://purl.obolibrary.org/obo/APOLLO_SV_00000031
10 APOLLO_SV Apollo Structured Vocabulary
11 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
12 ARO Antibiotic Resistance Ontology
13 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
14 BAO BioAssay Ontology
15 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
16 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
17 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
18 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
19 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
20 BOOTStrep Gene Regulation Ontology
21 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
22 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
23 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
24 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
25 CDNO Compositional Dietary Nutrition Ontology
26 CEPH Cephalopod Ontology
27 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
28 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
29 CHIRO CHEBI Integrated Role Ontology
30 CHMO Chemical Methods Ontology
31 CIDO Coronavirus Infectious Disease Ontology
32 CIO Confidence Information Ontology
33 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
34 CLAO Collembola Anatomy Ontology
35 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
36 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
37 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
38 CLYH Clytia hemisphaerica Development and Anatomy Ontology
39 CMF CranioMaxilloFacial ontology
40 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
41 COB Core Ontology for Biology and Biomedicine
42 COLAO Coleoptera Anatomy Ontology
43 CRO Contributor Role Ontology
44 CTCAE-OAEview OAE CTCAE view
45 CTENO Ctenophore Ontology
46 CTO CTO: Core Ontology of Clinical Trials
47 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
48 d-acts Ontology of Document Acts
49 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
50 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
51 DDPHENO Dictyostelium discoideum phenotype ontology
52 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
53 DINTO The Drug-Drug Interactions Ontology
54 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
55 DPO Drosophila Phenotype Ontology
56 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
57 DUO Data Use Ontology
58 ECAO The Echinoderm Anatomy and Development Ontology
59 ECO Evidence ontology http://purl.obolibrary.org/obo/ECO_0000321
60 ECOCORE An ontology of core ecological entities
61 ECTO Environmental conditions, treatments and exposures ontology
62 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
63 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
64 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
65 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
66 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
67 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
68 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
69 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
70 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
71 EPIO Epilepsy Ontology
72 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
73 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
74 EUPATH VEuPathDB ontology
75 EV eVOC (Expressed Sequence Annotation for Humans)
76 ExO Exposure ontology
77 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
78 FBBI Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
79 FBBT Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
80 FBCV FlyBase Controlled Vocabulary
81 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
82 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
83 FIDEO Food Interactions with Drugs Evidence Ontology
84 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
85 FLOPO Flora Phenotype Ontology
86 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
87 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
88 FOBI FOBI
89 FOODON FOODON
90 FOVT FuTRES Ontology of Vertebrate Traits
91 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
92 GAZ Gazetteer
93 GECKO Genomics Cohorts Knowledge Ontology
94 GENEPIO Genomic Epidemiology Ontology
95 GENO Genotype Ontology
96 GEO Geographical Entity Ontology
97 GNO Glycan Naming and Subsumption Ontology (GNOme)
98 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
99 GRO Cereal Plant Gross Anatomy
100 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
101 HABRONATTUS Habronattus courtship
102 HANCESTRO Human Ancestry Ontology
103 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
104 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
105 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
106 HP Human Phenotype Ontology http://purl.obolibrary.org/obo/HP_0008736
107 HSAPDV Human Developmental Stages
108 HSO Health Surveillance Ontology
109 HTN Hypertension Ontology
110 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
111 IAO-Onto-Meta IAO Ontology Metadata
112 ICDO International Classification of Disease Ontology
113 ICEO Integrative and Conjugative Element Ontology
114 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
115 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
116 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
117 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
118 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
119 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
120 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
121 IPR Protein Domains
122 KISAO Kinetic Simulation Algorithm Ontology
123 KTAO Kidney Tissue Atlas Ontology
124 LABO clinical LABoratory Ontology
125 LINCS-CLOview CLO LINCS view
126 LiPrO Lipid Ontology
127 LOGGERHEAD Loggerhead nesting
128 LTHIDO LTHIDO
129 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
130 MAMO Mathematical modeling ontology
131 MAO Multiple alignment
132 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
133 MAXO Medical Action Ontology
134 MCO Microbial Conditions Ontology
135 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
136 MFMO Mammalian Feeding Muscle Ontology
137 MFO Medaka fish anatomy and development
138 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
139 MFOMD Mental Disease Ontology
140 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
141 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
142 MicrO Ontology of Prokaryotic Phenotypic and Metabolic Characters
143 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
144 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
145 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
146 MMUSDV Mouse Developmental Stages
147 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
148 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
149 MONDO Mondo Disease Ontology
150 MOP Molecular Process Ontology
151 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
152 MPATH Mouse pathology ontology
153 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
154 MPIO Minimum PDDI Information Ontology
155 MRO MHC Restriction Ontology
156 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
157 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
158 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
159 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
160 ncithesaurus NCI Thesaurus
161 NCRO Non-Coding RNA Ontology
162 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
163 NFO NFO
164 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
165 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
166 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
167 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
168 NOMEN NOMEN - A nomenclatural ontology for biological names
169 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
170 OARCS Ontology of Arthropod Circulatory Systems
171 OBA Ontology of Biological Attributes
172 OBCS Ontology of Biological and Clinical Statistics
173 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
174 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
175 OBIB Ontology for Biobanking
176 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
177 OboInOwl OboInOwl OBO Format metamodel
178 OBO_REL OBO relationship types (legacy)
179 OCE Ontology of Chemical Elements
180 OCMR Ontology of Chinese Medicine for Rheumatism
181 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
182 OCVDAE Ontology of Cardiovascular Drug Adverse Events
183 ODAE Ontology of Drug Adverse Events
184 ODNAE Ontologyof Drug Neuropathy Adverse Events
185 OGG The Ontology of Genes and Genomes
186 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
187 OGG-Bac Ontology of Genes and Genomes-Bacteria
188 OGG-Base Ontology of Genes and Genomes-Base
189 OGG-Bru Ontology of Genes and Genomes - Brucella
190 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
191 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
192 OGG-Dr Ontology of Genes and Genomes - Zebrafish
193 OGG-Hs Ontology of Genes and Genomes-Human
194 OGG-Mm Ontology of Genes and Genomes - Mouse
195 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
196 OGG-Sc Ontology of Genes and Genomes - Yeast
197 OGG-Vir Ontology of Genes and Genomes - Viruses
198 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
199 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
200 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
201 OHD The Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
202 OHMI Ontology of Host-Microbiome Interactions
203 OHPI Ontology of Host Pathogen Interactions
204 OLAM Ontology of Laboratory Animal Medicine
205 OLATDV Medaka Developmental Stages
206 OLOBO Ontology for Linking Biological and Medical Ontologies
207 OMIABIS Ontologized MIABIS
208 OMIT Ontology for MIRNA Target
209 OMO OBO Metadata Ontology
210 OMP Ontology of Microbial Phenotypes
211 OMRSE Ontology of Medically Related Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
212 ONE Ontology for Nutritional Epidemiology
213 ONS Ontology for Nutritional Studies
214 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
215 ONTONEO Obstetric and Neonatal Ontology
216 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
217 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
218 OPMI Ontology of Precision Medicine and Investigation
219 ORNASEQ Ontology of RNA Sequencing
220 OSCI Ontology for Stem Cell Investigations
221 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
222 PAO Plant Anatomy Ontology
223 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
224 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
225 PDRO The Prescription of Drugs Ontology
226 PDUMDV Platynereis Developmental Stages
227 PD_ST Platynereis stage ontology
228 PECO Plant Experimental Conditions Ontology
229 PGDSO Plant Growth and Development Stage
230 PHIPO Pathogen Host Interaction Phenotype Ontology
231 PLANA planaria-ontology
232 PLANP Planarian Phenotype Ontology
233 PLO Plasmodium life cycle
234 PNO Proper Name Ontology
235 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
236 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
237 PPO Plant Phenology Ontology
238 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
239 PROCO Process Chemistry Ontology
240 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
241 PSDO Performance Summary Display Ontology
242 PSO Plant Stress Ontology
243 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
244 RBO Radiation Biology Ontology
245 Reactome Reactome Ontology
246 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
247 RESID Protein covalent bond
248 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
249 RNAO RNA ontology
250 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
251 ROLEO Role Ontology
252 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
253 RXNO Name Reaction Ontology
254 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
255 SBO Systems Biology Ontology
256 SCDO Sickle Cell Disease Ontology
257 SDGIO Sustainable Development Goals Interface Ontology
258 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
259 SEPIO Scientific Evidence and Provenance Information Ontology
260 SIBO Social Insect Behavior Ontology
261 SIO Semanticscience Integrated Ontology
262 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
263 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
264 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
265 STATO The Statistical Methods Ontology
266 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
267 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
268 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
269 TAHE Terminology of Anatomy of Human Embryology
270 TAHH Terminology of Anatomy of Human Histology
271 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
272 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
273 TCMDPO Traditional Chiinese Medicine DPO
274 TFClass_human Ontology of Human Transcription Factors
275 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
276 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
277 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
278 TSO Transportation System Ontology
279 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
280 TXPO Toxic Process Ontology
281 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
282 uberon-basic Uber anatomy ontology, basic version
283 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
284 uberon_depictions uberon_depictions
285 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
286 UPA Unipathway
287 UPHENO Unified phenotype ontology (uPheno)
288 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
289 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
290 VICO Vaccination Informed Consent Ontology
291 VIDO Virus Infectious Disease Ontology
292 VIO Vaccine Investigation Ontology
293 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
294 VIVO-ISF VIVO-ISF
295 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
296 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
297 VT Vertebrate trait ontology
298 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
299 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
300 WBLS C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
301 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
302 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
303 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
304 XL Cross-linker reagents ontology
305 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
306 XPO Xenopus Phenotype Ontology
307 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
308 ZEA Maize gross anatomy
309 ZECO Zebrafish Experimental Conditions Ontology
310 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
311 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
312 ZP Zebrafish Phenotype Ontology