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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AfPO African Population Ontology
8 AGRO Agronomy Ontology
9 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
10 AMPHX The Amphioxus Development and Anatomy Ontology
11 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
12 APOLLO_SV Apollo Structured Vocabulary
13 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
14 ARO Antibiotic Resistance Ontology
15 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
16 BAO BioAssay Ontology
17 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
18 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
19 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
20 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
21 BIDO Bacteria Infectious Disease Ontology
22 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
23 BMONT Biomarker Ontology
24 BOOTStrep Gene Regulation Ontology
25 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
26 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
27 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
28 CCFO Common Coordinate Framework Ontology
29 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
30 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
31 CDNO Compositional Dietary Nutrition Ontology
32 CEPH Cephalopod Ontology
33 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
34 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
35 CHIRO CHEBI Integrated Role Ontology
36 CHMO Chemical Methods Ontology
37 CIDO Coronavirus Infectious Disease Ontology
38 CIO Confidence Information Ontology
39 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
40 CLAO Collembola Anatomy Ontology
41 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
42 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
43 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
44 CLYH Clytia hemisphaerica Development and Anatomy Ontology
45 CMF CranioMaxilloFacial ontology
46 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
47 COB Core Ontology for Biology and Biomedicine
48 COLAO Coleoptera Anatomy Ontology (COLAO)
49 CRO Contributor Role Ontology
50 CTCAE-OAEview OAE CTCAE view
51 CTENO Ctenophore Ontology
52 CTO CTO: Core Ontology of Clinical Trials
53 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
54 d-acts Ontology of Document Acts
55 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
56 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
57 DDPHENO Dictyostelium discoideum phenotype ontology
58 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
59 DINTO The Drug-Drug Interactions Ontology
60 DISDRIV Disease Drivers Ontology
61 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
62 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
63 DUO Data Use Ontology
64 ECAO The Echinoderm Anatomy and Development Ontology
65 ECO Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/ECO_0000321
66 ECOCORE An ontology of core ecological entities
67 ECTO Environmental conditions, treatments and exposures ontology
68 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
69 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
70 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
71 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
72 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
73 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
74 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
75 EMRO Emotion Response Ontology
76 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
77 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
78 EPIO Epilepsy Ontology
79 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
80 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
81 EUPATH VEuPathDB ontology
82 EV eVOC (Expressed Sequence Annotation for Humans)
83 EXMO Exercise Medicine Ontology
84 ExO Exposure ontology
85 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
86 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
87 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
88 FBcv FlyBase Controlled Vocabulary
89 FBcv Drosophila Phenotype Ontology
90 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
91 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
92 FIDEO Food Interactions with Drugs Evidence Ontology
93 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
94 FLOPO Flora Phenotype Ontology
95 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
96 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
97 FOBI Food-Biomarker Ontology
98 FOODON Food Ontology
99 FOVT FuTRES Ontology of Vertebrate Traits
100 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
101 GALLONT Plant Gall Ontology
102 GAZ Gazetteer
103 GECKO Genomics Cohorts Knowledge Ontology
104 GENEPIO Genomic Epidemiology Ontology
105 GENO Genotype Ontology
106 GEO Geographical Entity Ontology
107 GNO Glycan Naming and Subsumption Ontology (GNOme)
108 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
109 GRO Cereal Plant Gross Anatomy
110 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
111 HABRONATTUS Habronattus courtship
112 HANCESTRO Human Ancestry Ontology
113 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
114 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
115 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
116 HP Human Phenotype Ontology (HPO) http://purl.obolibrary.org/obo/HP_0008736
117 HsapDv Human Developmental Stages
118 HSO Health Surveillance Ontology
119 HTN Hypertension Ontology
120 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
121 IAO-Onto-Meta IAO Ontology Metadata
122 ICDO International Classification of Disease Ontology
123 ICEO Integrative and Conjugative Element Ontology
124 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
125 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
126 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
127 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
128 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
129 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
130 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
131 IPR Protein Domains
132 KISAO Kinetic Simulation Algorithm Ontology
133 KTAO Kidney Tissue Atlas Ontology
134 LABO clinical LABoratory Ontology
135 LEPAO Lepidoptera Anatomy Ontology
136 LINCS-CLOview CLO LINCS view
137 LiPrO Lipid Ontology
138 LOGGERHEAD Loggerhead nesting
139 LTHIDO LTHIDO
140 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
141 MAMO Mathematical modeling ontology
142 MAO Multiple alignment
143 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
144 MAXO Medical Action Ontology
145 MCO Microbial Conditions Ontology
146 MCRO Model Card Report Ontology
147 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
148 MFMO Mammalian Feeding Muscle Ontology
149 MFO Medaka fish anatomy and development
150 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
151 MFOMD Mental Disease Ontology
152 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
153 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
154 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
155 MIDO Mycosis Infectious Disease Ontology
156 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
157 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
158 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
159 MmusDv Mouse Developmental Stages
160 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
161 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
162 MONDO Mondo Disease Ontology
163 MOP Molecular Process Ontology
164 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
165 MPATH Mouse pathology ontology
166 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
167 MPIO Minimum PDDI Information Ontology
168 MRO MHC Restriction Ontology
169 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
170 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
171 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
172 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
173 ncithesaurus NCI Thesaurus
174 NCRO Non-Coding RNA Ontology
175 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
176 NFO NFO
177 NGBO Next Generation Biobanking Ontology
178 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
179 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
180 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
181 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
182 NOMEN NOMEN - A nomenclatural ontology for biological names
183 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
184 OARCS Ontology of Arthropod Circulatory Systems
185 OBA Ontology of Biological Attributes
186 OBCS Ontology of Biological and Clinical Statistics
187 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
188 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
189 OBIB Ontology for Biobanking
190 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
191 OboInOwl OboInOwl OBO Format metamodel
192 OBO_REL OBO relationship types (legacy)
193 OCCO Occupation Ontology
194 OCE Ontology of Chemical Elements
195 OCMR Ontology of Chinese Medicine for Rheumatism
196 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
197 OCVDAE Ontology of Cardiovascular Drug Adverse Events
198 ODAE Ontology of Drug Adverse Events
199 ODNAE Ontologyof Drug Neuropathy Adverse Events
200 OGG The Ontology of Genes and Genomes
201 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
202 OGG-Bac Ontology of Genes and Genomes-Bacteria
203 OGG-Base Ontology of Genes and Genomes-Base
204 OGG-Bru Ontology of Genes and Genomes - Brucella
205 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
206 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
207 OGG-Dr Ontology of Genes and Genomes - Zebrafish
208 OGG-Hs Ontology of Genes and Genomes-Human
209 OGG-Mm Ontology of Genes and Genomes - Mouse
210 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
211 OGG-Sc Ontology of Genes and Genomes - Yeast
212 OGG-Vir Ontology of Genes and Genomes - Viruses
213 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
214 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
215 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
216 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
217 OHMI Ontology of Host-Microbiome Interactions
218 OHPI Ontology of Host Pathogen Interactions
219 OLAM Ontology of Laboratory Animal Medicine
220 OlatDv Medaka Developmental Stages
221 OLOBO Ontology for Linking Biological and Medical Ontologies
222 OM Ontology of units of Measure
223 OM Ontology of units of Measure
224 OMIABIS Ontologized MIABIS
225 OMIT Ontology for MIRNA Target
226 OMO OBO Metadata Ontology
227 OMP Ontology of Microbial Phenotypes
228 OMRSE Ontology for Modeling and Representation of Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
229 ONE Ontology for Nutritional Epidemiology
230 ONS Ontology for Nutritional Studies
231 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
232 ONTONEO Obstetric and Neonatal Ontology
233 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
234 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
235 OPMI Ontology of Precision Medicine and Investigation
236 ORNASEQ Ontology of RNA Sequencing
237 OSCI Ontology for Stem Cell Investigations
238 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
239 PAO Plant Anatomy Ontology
240 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
241 PBPKO Physiologically-Based Pharmacokinetic Ontology
242 PCL Provisional Cell Ontology
243 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
244 PDRO The Prescription of Drugs Ontology
245 PdumDv Platynereis Developmental Stages
246 PD_ST Platynereis stage ontology
247 PECO Plant Experimental Conditions Ontology
248 PGDSO Plant Growth and Development Stage
249 PHASES Promoting Health Aging through Semantic Enrichment of Solitude Research (PHASES) Ontology
250 PHIPO Pathogen Host Interaction Phenotype Ontology
251 PIDO Parasite Infectious Disease Ontology
252 PLANA planaria-ontology
253 PLANP Planarian Phenotype Ontology
254 PLO Plasmodium life cycle
255 PNO Proper Name Ontology
256 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
257 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
258 PPO Plant Phenology Ontology
259 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
260 PREFER Precision Fermentation Ontology
261 PROCO Process Chemistry Ontology
262 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
263 PSDO Performance Summary Display Ontology
264 PSO Plant Stress Ontology
265 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
266 RBO Radiation Biology Ontology
267 Reactome Reactome Ontology
268 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
269 RESID Protein covalent bond
270 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
271 RNAO RNA ontology
272 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
273 ROLEO Role Ontology
274 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
275 RXNO Name Reaction Ontology
276 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
277 SBO Systems Biology Ontology
278 SCDO Sickle Cell Disease Ontology
279 SCO Sustainability Core Ontology
280 SDGIO Sustainable Development Goals Interface Ontology
281 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
282 SEPIO Scientific Evidence and Provenance Information Ontology
283 SIBO Social Insect Behavior Ontology
284 SIO Semanticscience Integrated Ontology
285 SLSO Space Life Sciences Ontology
286 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
287 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
288 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
289 STATO The Statistical Methods Ontology
290 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
291 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
292 T4FS terms4FAIRskills
293 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
294 TAHE Terminology of Anatomy of Human Embryology
295 TAHH Terminology of Anatomy of Human Histology
296 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
297 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
298 TCMDPO Traditional Chiinese Medicine DPO
299 TFClass_human Ontology of Human Transcription Factors
300 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
301 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
302 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
303 TSO Transportation System Ontology
304 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
305 TXPO Toxic Process Ontology
306 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
307 uberon-basic Uber anatomy ontology, basic version
308 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
309 uberon_depictions uberon_depictions
310 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
311 UPA Unipathway
312 UPHENO Unified Phenotype Ontology (uPheno)
313 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
314 VBO Vertebrate Breed Ontology
315 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
316 VICO Vaccination Informed Consent Ontology
317 VIDO Virus Infectious Disease Ontology
318 VIO Vaccine Investigation Ontology
319 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
320 VIVO-ISF VIVO-ISF
321 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
322 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
323 VT Vertebrate trait ontology
324 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
325 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
326 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
327 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
328 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
329 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
330 XL Cross-linker reagents ontology
331 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
332 XPO Xenopus Phenotype Ontology
333 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
334 ZEA Maize gross anatomy
335 ZECO Zebrafish Experimental Conditions Ontology
336 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
337 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
338 ZP Zebrafish Phenotype Ontology